Author: plessy Date: 2009-02-02 05:09:39 +0000 (Mon, 02 Feb 2009) New Revision: 3077
Added: trunk/packages/last-align/trunk/debian/NEWS Modified: trunk/packages/last-align/trunk/debian/README.source trunk/packages/last-align/trunk/debian/changelog trunk/packages/last-align/trunk/debian/copyright trunk/packages/last-align/trunk/debian/rules Log: New upstream release breaking backward compatibility. Added: trunk/packages/last-align/trunk/debian/NEWS =================================================================== --- trunk/packages/last-align/trunk/debian/NEWS (rev 0) +++ trunk/packages/last-align/trunk/debian/NEWS 2009-02-02 05:09:39 UTC (rev 3077) @@ -0,0 +1,6 @@ +last-align (39-1) unstable; urgency=low + + Old lastdb protein databases built with last-align version lower than 39 + won't work properly: you need to re-run lastdb. + + -- Charles Plessy <[email protected]> Mon, 02 Feb 2009 12:42:26 +0900 Property changes on: trunk/packages/last-align/trunk/debian/NEWS ___________________________________________________________________ Name: svn:mergeinfo + Modified: trunk/packages/last-align/trunk/debian/README.source =================================================================== --- trunk/packages/last-align/trunk/debian/README.source 2009-01-31 12:53:56 UTC (rev 3076) +++ trunk/packages/last-align/trunk/debian/README.source 2009-02-02 05:09:39 UTC (rev 3077) @@ -1,9 +1,3 @@ -This package is maintained by the Debian Med packaging team. Please refer to -our group policy if you would like to commit to our Subversion repository. All -Debian developpers have write acces to it. - -http://debian-med.alioth.debian.org/docs/policy.html - Upstream sources are distributed as a ZIP archive. The debian/rules file contains a rule named `get-orig-source' to create a gzipped tar archive whose name follows the Debian policy. Modified: trunk/packages/last-align/trunk/debian/changelog =================================================================== --- trunk/packages/last-align/trunk/debian/changelog 2009-01-31 12:53:56 UTC (rev 3076) +++ trunk/packages/last-align/trunk/debian/changelog 2009-02-02 05:09:39 UTC (rev 3077) @@ -1,3 +1,17 @@ +last-align (39-1) unstable; urgency=low + + * New upstream release. + - Bugfix: for protein alignments, tyrosine was forbidden in initial + matches. + - *Old lastdb protein databases won't work properly: you need to re-run + lastdb.* + * Added debian/NEWS.Debian to indicate the backward incompatibility. + * Debian/changelog: removed vanity entries and incremented copyright year. + * Transferred informations about packaging practices and repository from + README.source to README.Debian. + + -- Charles Plessy <[email protected]> Mon, 02 Feb 2009 12:42:26 +0900 + last-align (37-1) unstable; urgency=low * New upstream release. @@ -7,7 +21,7 @@ Linux-2.6.13/x86_64/gcc-4.0.2). - Made lastdb radix sort a bit faster, with the oracle array trick. - Allowed the mismatch score to be zero, due to a request. - - Made gapped extension faster for short sequences (e.g. tag mapping). + - Made gaped extension faster for short sequences (e.g. tag mapping). - Bugfix: the sequence names weren't printed correctly for match-counting output (-j 0). - Fixed compiler warnings with gcc 4.3. Modified: trunk/packages/last-align/trunk/debian/copyright =================================================================== --- trunk/packages/last-align/trunk/debian/copyright 2009-01-31 12:53:56 UTC (rev 3076) +++ trunk/packages/last-align/trunk/debian/copyright 2009-02-02 05:09:39 UTC (rev 3077) @@ -1,11 +1,9 @@ Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat Upstream-Author: Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> -X-Packaged-By: Charles Plessy <[email protected]> -X-Packaged-Date: Wed, 10 Sep 2008 19:49:11 +0900 -Upstream-Source: http://last.cbrc.jp/archive/last-31.zip +Upstream-Source: http://last.cbrc.jp/archive/last-39.zip Files: * -Copyright: © 2008 Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> +Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> License: GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -36,6 +34,6 @@ License: GPL-3+ Files: debian/* -Copyright: © 2008, Charles Plessy <[email protected]> +Copyright: © 2008–2009, Charles Plessy <[email protected]> License: Same as LAST itself See above. Modified: trunk/packages/last-align/trunk/debian/rules =================================================================== --- trunk/packages/last-align/trunk/debian/rules 2009-01-31 12:53:56 UTC (rev 3076) +++ trunk/packages/last-align/trunk/debian/rules 2009-02-02 05:09:39 UTC (rev 3077) @@ -1,5 +1,11 @@ #!/usr/bin/make -f +# This package is maintained by the Debian Med packaging team. Please refer to +# our group policy if you would like to commit to our Subversion repository. All +# Debian developpers have write acces to it. +# +# http://debian-med.alioth.debian.org/docs/policy.html + include /usr/share/cdbs/1/rules/debhelper.mk include /usr/share/cdbs/1/class/makefile.mk _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
