Andreas Tille pushed to branch master at Debian Med / diamond-aligner
Commits: c8961dd6 by Andreas Tille at 2019-08-01T12:55:18Z Build issue fixed by upstream commit - - - - - 8a9614b3 by Andreas Tille at 2019-08-01T13:00:21Z Drop unneeded paragraph from d/copyright - - - - - 0ce1d6b3 by Andreas Tille at 2019-08-01T13:02:36Z Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/copyright - + debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,12 +1,11 @@ -diamond-aligner (0.9.25+dfsg-1) UNRELEASED; urgency=medium +diamond-aligner (0.9.25+dfsg-1) unstable; urgency=medium * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 - TODO: Build issue see - https://github.com/bbuchfink/diamond/issues/295 + * Drop unneeded paragraph from d/copyright - -- Andreas Tille <[email protected]> Wed, 31 Jul 2019 14:57:15 +0200 + -- Andreas Tille <[email protected]> Thu, 01 Aug 2019 15:00:33 +0200 diamond-aligner (0.9.24+dfsg-1) unstable; urgency=medium ===================================== debian/copyright ===================================== @@ -9,29 +9,6 @@ Files: * Copyright: 2014-2016, University of Tuebingen, Benjamin Buchfink License: BSD-3-clause -Files: src/util/fast_mutex.h - src/util/tinythread.* -Copyright: 2010-2012 Marcus Geelnard -License: as-is - This software is provided 'as-is', without any express or implied - warranty. In no event will the authors be held liable for any damages - arising from the use of this software. - . - Permission is granted to anyone to use this software for any purpose, - including commercial applications, and to alter it and redistribute it - freely, subject to the following restrictions: - . - 1. The origin of this software must not be misrepresented; you must not - claim that you wrote the original software. If you use this software - in a product, an acknowledgment in the product documentation would be - appreciated but is not required. - . - 2. Altered source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - . - 3. This notice may not be removed or altered from any source - distribution. - Files: debian/* Copyright: 2016 Andreas Tille <[email protected]> License: BSD-3-clause ===================================== debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch ===================================== @@ -0,0 +1,22 @@ +From 82feea2aee5c82e283704b9317cb5e8abc625f90 Mon Sep 17 00:00:00 2001 +From: Benjamin Buchfink <[email protected]> +Date: Thu, 1 Aug 2019 14:36:14 +0200 +Subject: [PATCH] Fixed #295. + +--- + src/dp/needleman_wunsch.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/dp/needleman_wunsch.cpp b/src/dp/needleman_wunsch.cpp +index abb47bb..2050eea 100644 +--- a/src/dp/needleman_wunsch.cpp ++++ b/src/dp/needleman_wunsch.cpp +@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>& needleman_wunsch(sequence query, sequence subj + return mtx.score_buffer(); + } + +-template const Fixed_score_buffer<int>& needleman_wunsch(sequence query, sequence subject, int &max_score, const Local&, const int&); ++// template const Fixed_score_buffer<int>& needleman_wunsch(sequence query, sequence subject, int &max_score, const Local&, const int&); + + int needleman_wunsch(sequence query, sequence subject, int qbegin, int qend, int sbegin, int send, unsigned node, unsigned edge, Diag_graph &diags, bool log) + { ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ avoid_unwanted_optimisation.patch no_march_native.patch +82feea2aee5c82e283704b9317cb5e8abc625f90.patch View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/compare/2ff71e00a1b589ddd4dd6097a028704e85de824a...0ce1d6b30077b33d8db9b51fcceb104a98d49694 -- View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/compare/2ff71e00a1b589ddd4dd6097a028704e85de824a...0ce1d6b30077b33d8db9b51fcceb104a98d49694 You're receiving this email because of your account on salsa.debian.org.
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