Your message dated Sun, 16 Feb 2014 19:00:05 +0000
with message-id <e1wf6wf-0005en...@franck.debian.org>
and subject line Bug#737103: fixed in gmsh 2.8.3+dfsg-5
has caused the Debian Bug report #737103,
regarding gmsh: Gmsh is build with openmp silently enabled
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
737103: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737103
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gmsh
Version: 2.8.3+dfsg-4
Severity: important
Dear Maintainer,
debian/rules in gmsh package passes -fopenmp to CMake in debian/rules.
This results in experimental OPENMP feature silently enabled
( there is #if defined(_OPENMP) check in source) and then gmsh fails
sometimes with segfault as result of race condition.
I tried removing -fopenmp, package builds and gmsh seems to work.
from debian/rules:
ifeq (,$(filter $(DEB_HOST_ARCH),$(disable_mpi_archs)))
extra_flags += \
-DCMAKE_CXX_FLAGS="-DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX
-fopenmp -lmpi -fPIC \
-Wall $(shell dpkg-buildflags --get CXXFLAGS)" \
-DENABLE_MPI:BOOL=ON
else
extra_flags += \
-DCMAKE_CXX_FLAGS="-DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX
-fopenmp -fPIC \
-Wall $(shell dpkg-buildflags --get CXXFLAGS)" \
-DENABLE_MPI:BOOL=OFF
endif
Best Regards,
Petr Ledvina
-- System Information:
Debian Release: 7.3
APT prefers stable
APT policy: (900, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages gmsh depends on:
ii dpkg 1.16.12
ii install-info 4.13a.dfsg.1-10
ii libann0 1.1.2+doc-3
ii libblas3 [libblas.so.3] 1.2.20110419-5
ii libc6 2.13-38
ii libfltk-gl1.3 1.3.0-8
ii libfltk-images1.3 1.3.0-8
ii libfltk1.3 1.3.0-8
ii libgcc1 1:4.7.2-5
ii libgl1-mesa-glx [libgl1] 8.0.5-4+deb7u2
ii libgl2ps0 1.3.6-1
ii libglu1-mesa [libglu1] 8.0.5-4+deb7u2
ii libgmp10 2:5.0.5+dfsg-2
ii libjpeg8 8d-1
ii liblapack3 [liblapack.so.3] 3.4.1+dfsg-1+deb70u1
ii libmed1 3.0.3-3
ii liboce-foundation2 0.9.1-3
ii liboce-modeling2 0.9.1-3
ii libopenmpi1.3 1.4.5-1
ii libpng12-0 1.2.49-1
ii libstdc++6 4.7.2-5
ii libx11-6 2:1.5.0-1+deb7u1
ii mpi-default-bin 1.0.1
Versions of packages gmsh recommends:
pn gmsh-doc <none>
gmsh suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: gmsh
Source-Version: 2.8.3+dfsg-5
We believe that the bug you reported is fixed in the latest version of
gmsh, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 737...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Anton Gladky <gl...@debian.org> (supplier of updated gmsh package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 06 Feb 2014 22:51:15 +0100
Source: gmsh
Binary: gmsh gmsh-doc libgmsh-dev libgmsh2 libjava-gmsh2 python-gmsh
Architecture: source amd64 all
Version: 2.8.3+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Anton Gladky <gl...@debian.org>
Description:
gmsh - Three-dimensional finite element mesh generator
gmsh-doc - Three-dimensional finite element mesh generator
libgmsh-dev - Three-dimensional finite element mesh generator. Development file
libgmsh2 - Three-dimensional finite element mesh generator. Shared library
libjava-gmsh2 - Three-dimensional finite element mesh generator. Java wrapper
python-gmsh - Three-dimensional finite element mesh generator. Python wrapper
Closes: 729653 735018 737103
Changes:
gmsh (2.8.3+dfsg-5) unstable; urgency=medium
.
* [6168e45] Return back python-gmsh and gmsh-doc removed accidentally
in last uploads. (Closes: #729653)
* [a6c5815] Use wrap-and-sort.
* [e1cb0a0] Set Standards-Version: 3.9.5. No changes.
* [7a492a8] Remove fopenmp option to escape race condition. (Closes: #737103)
* [cfdec5c] Enable powerpcspe arch. (Closes: #735018)
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Files:
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b34dcae5160d724988f0fdab19b0297a 27576 math optional
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gmsh_2.8.3+dfsg-5_amd64.deb
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gmsh-doc_2.8.3+dfsg-5_all.deb
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libgmsh-dev_2.8.3+dfsg-5_amd64.deb
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libgmsh2_2.8.3+dfsg-5_amd64.deb
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libjava-gmsh2_2.8.3+dfsg-5_amd64.deb
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python-gmsh_2.8.3+dfsg-5_amd64.deb
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