Very cool. I was noticing that it was downloading the umls resources
which the parser itself doesn't need -- so I made a change to not grab
clinical-pipeline and grab directly the things it was getting through
that reference and now it runs even faster with only a 35M initial download.
I'd like to check in my change -- should we keep working out of sandbox
or can we maybe put groovy scripts somewhere alongside the projects they
belong to? Maybe in the scripts/ directory or scripts/groovy,
scripts/perl, etc.? Any opinions on this?
Tim
On 11/27/2013 12:19 PM, Chen, Pei wrote:
The sample constituency parser printer should be working now...
Just copy and paste the text to parser.groovy and make it executable.
All you should need is groovy installed on your machine.
http://svn.apache.org/repos/asf/ctakes/sandbox/groovy/parser.groovy
$ parser.groovy input
Reading from directory: input
(TOP (S (NP-SBJ (NN patient)) (VP (VBD took) (NP (NP (NNS 50mg)) (PP (IN of)
(NP (NP (NN aspirin)) (PP (IN for) (NP (NP (NN pain)) (PP-LOC (IN in) (NP (NN
knee)))))))))(. .)))
Maybe we could create one that will output UMLS CUI/Codes... and then others
could easily modify to their needs.
--Pei
-----Original Message-----
From: William Karl Thompson [mailto:[email protected]]
Sent: Tuesday, November 26, 2013 10:46 PM
To: [email protected]
Subject: RE: cTAKES Groovy...
That is very cool!
Since we're talking Groovy, I'd just like make a plug for Gradle, a fantastic
build/deployment/dependency management tool that is in many ways much
nicer to work with than Maven, though it plays nicely with Maven (for
example, it can use Maven repositories). Gradle is also proven technology:
it's the build tool for the Android operating system.
________________________________________
From: Chen, Pei [[email protected]]
Sent: Tuesday, November 26, 2013 4:13 PM
To: [email protected]
Subject: cTAKES Groovy...
Tim had a good end user use case:
I just want to use the ctakes constituency parser and output the tree text to
console.
So I was inspired by Richard example of groovy...
Check out:
http://svn.apache.org/repos/asf/ctakes/sandbox/groovy/parser.groovy
The groovy script will "Automagically" download the required
classes,jars,resources and automatically runs.
No longer requires the user to have any knowledge of UIMA, cTAKES, etc.
Sample:
$ parser.groovy input
Reading from directory: input
patient took 50mg of aspirin for pain in knee.
begin:0 end:48
Pretty cool, 'eh...
--Pei
