In Fedora, installing "libappindicator" and "libappindicator-gtk3" makes the Network Manager Applet work without Xembed but the systray is all messed up. The first app loaded works properly but when you load additional apps, you get distorted and overlapping icons which do not go away entirely when the app is closed. Restarting E fixes the current problems but everything goes South again the next time you make any change to the systray. At any rate, it works a lot better with Xembed. AppIndicator probably needs more work before Xembed is eliminated.
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