You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Log URL:        
https://pkg-status.freebsd.org/ampere3/data/141releng-armv7-default/332c73b035e3/logs/fastani-1.34.log
Build URL:      
https://pkg-status.freebsd.org/ampere3/build.html?mastername=141releng-armv7-default&build=332c73b035e3
Log:

=>> Building biology/fastani
build started at Thu Nov  7 18:18:01 UTC 2024
port directory: /usr/ports/biology/fastani
package name: fastani-1.34
building for: FreeBSD 141releng-armv7-default-job-09 14.1-RELEASE-p5 FreeBSD 
14.1-RELEASE-p5 1401000 arm
maintained by: y...@freebsd.org
Makefile datestamp: -rw-r--r--  1 root wheel 597 Oct  1 01:02 
/usr/ports/biology/fastani/Makefile
Ports top last git commit: 332c73b035e
Ports top unclean checkout: no
Port dir last git commit: 89f62deb8a9
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1401000
Job Id: 09

---Begin Environment---
SHELL=/bin/sh
OSVERSION=1401000
UNAME_v=FreeBSD 14.1-RELEASE-p5 1401000
UNAME_r=14.1-RELEASE-p5
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/141releng-armv7-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/141releng-armv7-default/09/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=141releng-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/141releng-armv7-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
y...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fastani/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fastani/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/fastani/work/.cache  
HOME=/wrkdirs/usr/ports/biology/fastani/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/fastani/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/fastani/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fastani/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fastani/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/fastani/work/.cache  
HOME=/wrkdirs/usr/ports/biology/fastani/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/fastani/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/fastani/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DESTDIR=/wrkdirs/usr/ports/biology/fastani/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" 
-fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing  " BSD_INSTALL_PROGRAM="install  
-s -m 555"  BSD_INSTALL_LIB="install  -s -m 0
644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644" 
 BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/fastani"  
EXAMPLESDIR="share/examples/fastani"  DATADIR="share/fastani"  
WWWDIR="www/fastani"  ETCDIR="etc/fastani"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/fastani 
DOCSDIR=/usr/local/share/doc/fastani 
EXAMPLESDIR=/usr/local/share/examples/fastani  WWWDIR=/usr/local/www/fastani 
ETCDIR=/usr/local/etc/fastani
--End SUB_LIST--

---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  8192
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   fastani-1.34 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.3.pkg
[141releng-armv7-default-job-09] Installing pkg-1.21.3...
[141releng-armv7-default-job-09] Extracting pkg-1.21.3: .......... done
===>   fastani-1.34 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of fastani-1.34
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by fastani-1.34 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by fastani-1.34 for building
=> SHA256 Checksum OK for ParBLiSS-FastANI-v1.34_GH0.tar.gz.
=> SHA256 Checksum OK for catchorg-Catch2-359542d_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by fastani-1.34 for building
===>  Extracting for fastani-1.34
=> SHA256 Checksum OK for ParBLiSS-FastANI-v1.34_GH0.tar.gz.
=> SHA256 Checksum OK for catchorg-Catch2-359542d_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for fastani-1.34
===>  Applying FreeBSD patches for fastani-1.34 from 
/usr/ports/biology/fastani/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   fastani-1.34 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.30.5.pkg
[141releng-armv7-default-job-09] Installing cmake-core-3.30.5...
[141releng-armv7-default-job-09] `-- Installing expat-2.6.3...
[141releng-armv7-default-job-09] `-- Extracting expat-2.6.3: .......... done
[141releng-armv7-default-job-09] `-- Installing jsoncpp-1.9.6_1...
[141releng-armv7-default-job-09] `-- Extracting jsoncpp-1.9.6_1: .......... done
[141releng-armv7-default-job-09] `-- Installing libuv-1.49.1...
[141releng-armv7-default-job-09] `-- Extracting libuv-1.49.1: .......... done
[141releng-armv7-default-job-09] `-- Installing rhash-1.4.4_1...
[141releng-armv7-default-job-09] |   `-- Installing gettext-runtime-0.22.5...
[141releng-armv7-default-job-09] |   | `-- Installing indexinfo-0.3.1...
[141releng-armv7-default-job-09] |   | `-- Extracting indexinfo-0.3.1: .... done
[141releng-armv7-default-job-09] |   `-- Extracting gettext-runtime-0.22.5: 
.......... done
[141releng-armv7-default-job-09] `-- Extracting rhash-1.4.4_1: .......... done
[141releng-armv7-default-job-09] Extracting cmake-core-3.30.5: .......... done
===>   fastani-1.34 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of fastani-1.34
===>   fastani-1.34 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.11.1,4.pkg
[141releng-armv7-default-job-09] Installing ninja-1.11.1,4...
[141releng-armv7-default-job-09] `-- Installing python311-3.11.10...
[141releng-armv7-default-job-09] |   `-- Installing libffi-3.4.6...
[141releng-armv7-default-job-09] |   `-- Extracting libffi-3.4.6: .......... 
done
[141releng-armv7-default-job-09] |   `-- Installing mpdecimal-4.0.0...
[141releng-armv7-default-job-09] |   `-- Extracting mpdecimal-4.0.0: .......... 
done
[141releng-armv7-default-job-09] |   `-- Installing readline-8.2.13_2...
[141releng-armv7-default-job-09] |   `-- Extracting readline-8.2.13_2: 
.......... done
[141releng-armv7-default-job-09] `-- Extracting python311-3.11.10: .......... 
done
[141releng-armv7-default-job-09] Extracting ninja-1.11.1,4: ........ done
=====
Message from python311-3.11.10:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py311-gdbm       databases/py-gdbm@py311
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
===>   fastani-1.34 depends on executable: ninja - found
===>   Returning to build of fastani-1.34
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   fastani-1.34 depends on shared library: libgsl.so - not found
===>   Installing existing package /packages/All/gsl-2.7.1_1.pkg
[141releng-armv7-default-job-09] Installing gsl-2.7.1_1...
[141releng-armv7-default-job-09] Extracting gsl-2.7.1_1: .......... done
===>   fastani-1.34 depends on shared library: libgsl.so - found 
(/usr/local/lib/libgsl.so)
===>   Returning to build of fastani-1.34
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for fastani-1.34
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/fastani/work/.build
-- The CXX compiler identification is Clang 18.1.5
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found ZLIB: /usr/lib/libz.so (found suitable version "1.3.1", minimum 
required is "1.1")
Using zlib library v1.3.1
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) 
-- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) 
NOTE: OpenMP not found; Compiling as a single threaded app...
-- Found GSL: /usr/local/include (found suitable version "2.7.1", minimum 
required is "1.6")
GSL v2.7.1 Found: 
-- Configuring done (1.2s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_COLOR_MAKEFILE
    CMAKE_C_COMPILER
    CMAKE_C_FLAGS
    CMAKE_C_FLAGS_DEBUG
    CMAKE_C_FLAGS_RELEASE
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_SHARED_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    FETCHCONTENT_FULLY_DISCONNECTED
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: 
/wrkdirs/usr/ports/biology/fastani/work/.build
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for fastani-1.34
[ 33% 2/3] /usr/bin/c++  
-I/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src -I/usr/local/include 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing   -DNDEBUG -MD -MT 
CMakeFiles/fastANI.dir/src/cgi/main.cpp.o -MF 
CMakeFiles/fastANI.dir/src/cgi/main.cpp.o.d -o 
CMakeFiles/fastANI.dir/src/cgi/main.cpp.o -c 
/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src/cgi/main.cpp
[ 66% 2/3] /usr/bin/c++  
-I/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src -I/usr/local/include 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing   -DNDEBUG -MD -MT 
CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -MF 
CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o.d -o 
CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -c 
/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src/cgi/core_genome_identity.cpp
FAILED: CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o 
/usr/bin/c++  -I/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src 
-I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing 
-O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -DNDEBUG -MD -MT 
CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -MF 
CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o.d -o 
CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -c 
/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src/cgi/core_genome_identity.cpp
/wrkdirs/usr/ports/biology/fastani/work/FastANI-1.34/src/cgi/core_genome_identity.cpp:11:10:
 fatal error: 'omp.h' file not found
   11 | #include <omp.h>
      |          ^~~~~~~
1 error generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/fastani

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