Dear Douglas, Thank you. That helped. Following the earlier question, mri_annotation2label using the aparc.annot file ( Desikan atlas) gives me 35 labels in one hemisphere. Is there a list / look up table to know what each label is? So that based on what it is I can merge/edit or remove the ones I do not need.
Thanks for answering my questions, Madhura -----Original Message----- From: Douglas N Greve [mailto:[email protected]] Sent: Wed 1/5/2011 3:04 PM To: Ingalhalikar, Madhura Cc: [email protected] Subject: Re: [Freesurfer] .label file for each ROI? you can use mri_annotation2label to convert the annotations to labels. You can use mri_cor2label to convert a segmentation to a label (requires you run it once for each label). doug Ingalhalikar, Madhura wrote: > Hi, > I am trying to implement FSL and freesurfer to compute structural adjacency > matrix. The webpage > http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html has been a major help. I > just have one question. > When I use probtrackx for fiber tracking, I have to seed the cortical ROI's > and subcortical structres one by one. In this case, how can I create a .label > file for each cortical and subcortical ROI;s ? > > Thanks for your help, > > Madhura > > > The information contained in this e-mail message is intended only for the > personal and confidential use of the recipient(s) named above. If the reader > of this message is not the intended recipient or an agent responsible for > delivering it to the intended recipient, you are hereby notified that you > have received this document in error and that any review, dissemination, > distribution, or copying of this message is strictly prohibited. If you have > received this communication in error, please notify us immediately by e-mail, > and delete the original message. > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. The information contained in this e-mail message is intended only for the personal and confidential use of the recipient(s) named above. If the reader of this message is not the intended recipient or an agent responsible for delivering it to the intended recipient, you are hereby notified that you have received this document in error and that any review, dissemination, distribution, or copying of this message is strictly prohibited. If you have received this communication in error, please notify us immediately by e-mail, and delete the original message. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
