Doug- INPUT
mri_surf2surf --hemi rh --s UNM_SUPERSAMPLE --sval rh.meth.00.mgh --fwhm 10 --cortex --tval rh.meth.10.mgh OUTPUT srcsubject = UNM_SUPERSAMPLE srcval = rh.meth.00.mgh srctype = trgsubject = UNM_SUPERSAMPLE trgval = rh.meth.10.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = (null) label-trg = rh.cortex.label OKToRevFaceOrder = 1 Reading source surface reg /Volumes/Vol1/PI/UNM_processing/freesurfer_subjects/all_unm/UNM_SUPERSAMPLE/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 65 iterations of nearest-neighbor smoothing Reading smoothing mask label rh.cortex.label Graph: P mri_surf2surf: could not scan # of lines from /Volumes/Vol1/PI/UNM_processing/freesurfer_subjects/all_unm/UNM_SUPERSAMPLE/label/rh.cortex.label On 6/1/12, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > what is your full command line and terminal output? > doug > > On 06/01/2012 11:49 AM, Bruce Fischl wrote: >> that is the rh.cortex.label file? It doesn't look like it.... >> >> On Fri, 1 Jun 2012, mdkrue...@uwalumni.com >> wrote: >> >>> Bruce- >>> >>> Here you go. Subjects recoded. >>> >>> Graph: name >>> >>> Data: path >>> Variable: Subject >>> Measurement: external >>> subject id, class id, variable value, measurement value, standard >>> deviation >>> ------------ >>> S1 Cl1 0.0 3.10522500831 0.268702566292 >>> S2 Cl1 1.0 2.67585065105 0.396833961125 >>> S3 Cl1 2.0 3.07631433273 0.173949345568 >>> S4 Cl1 3.0 2.85668014067 0.0907729539181 >>> S5 Cl1 4.0 3.24184323479 0.212597547853 >>> S6 Cl1 5.0 2.54176559894 0.111183384791 >>> S7 Cl1 6.0 2.87165045086 0.137271513295 >>> S8 Cl1 7.0 2.72165358457 0.128648203321 >>> >>> On 6/1/12, Bruce Fischl<fis...@nmr.mgh.harvard.edu> wrote: >>>> something like this: >>>> >>>> head ~/local_subjects/bruce/label/rh.cortex.label >>>> #!ascii label , from subject vox2ras=TkReg >>>> 141813 >>>> 0 11.129 -93.761 -16.820 0.0000000000 >>>> 1 11.136 -93.912 -16.623 0.0000000000 >>>> 2 10.755 -93.913 -16.573 0.0000000000 >>>> 3 11.696 -93.374 -17.237 0.0000000000 >>>> 4 11.022 -93.203 -16.969 0.0000000000 >>>> 5 11.020 -93.855 -17.042 0.0000000000 >>>> 6 10.248 -93.745 -16.712 0.0000000000 >>>> 7 11.591 -93.603 -17.551 0.0000000000 >>>> >>>> >>>> >>>> and please cc the list so others can answer! >>>> On Fri, 1 Jun 2012, >>>> mdkrue...@uwalumni.com wrote: >>>> >>>>> Bruce- >>>>> The partition does not appear to be full, although we have been having >>>>> issues with migrating data so >>>>> that could be a source of the issue. The rh.cortex.label does exist and >>>>> is >>>>> located within the subject's >>>>> label dir. As for the first couple of lines, I am unsure what you are >>>>> asking for. >>>>> >>>>> Thanks for the quick response! >>>>> >>>>> Best- >>>>> Michael >>>>> >>>>> On Fri, Jun 1, 2012 at 10:26 AM, Bruce >>>>> Fischl<fis...@nmr.mgh.harvard.edu> >>>>> wrote: >>>>> Hi Michael >>>>> >>>>> can you check to see that your partition is not full? Does the >>>>> rh.cortex.label file exist >>>>> in that subject's label dir? If so, what are the first couple >>>>> of >>>>> lines? >>>>> >>>>> cheers >>>>> Bruce >>>>> >>>>> On Fri, 1 Jun 2012, mdkrue...@uwalumni.com wrote: >>>>> >>>>> To anyone who can help - >>>>> I am trying to tun a GLM on a set of data and am >>>>> currently >>>>> receiving an error >>>>> during the mri_surf2surf >>>>> portion. When running this portion i receive an error ( >>>>> could >>>>> not scan # of >>>>> lines from (path to >>>>> rh.cortex.label)). This does not happen when running this >>>>> portion for the lh, >>>>> only the right. I am >>>>> unable to find any information on this error on the >>>>> mailing >>>>> list so im hoping >>>>> someone can help! >>>>> >>>>> Best- >>>>> Michael Kruepke >>>>> >>>>> -- >>>>> Michael D. Kruepke >>>>> PhD - University of Illinois at Urbana-Champaign >>>>> BA - Psych - University of Wisconsin-Madison >>>>> mdkrue...@gmail.com >>>>> (262)-483-7449 >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to whom >>>>> it >>>>> is >>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>>> in >>>>> error >>>>> but does not contain patient information, please contact the sender >>>>> and >>>>> properly >>>>> dispose of the e-mail. >>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Michael D. Kruepke >>>>> PhD - University of Illinois at Urbana-Champaign >>>>> BA - Psych - University of Wisconsin-Madison >>>>> mdkrue...@gmail.com >>>>> (262)-483-7449 >>>>> >>>>> >>>>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Michael D. Kruepke BA-Psychology University of Wisconsin-Madison mdkrue...@uwalumni.com (262)-483-7449 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
