Doug - That does indeed seem to be the problem! Ill just rerun some things here to rectify that. Thanks for all the help everyone!
Best- Michael On Fri, Jun 1, 2012 at 11:01 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > I think the label file got overwritten at some point. Check the time > stamp and see if it is much different than the other rh files > > On 06/01/2012 11:55 AM, mdkrue...@uwalumni.com wrote: > > Bruce- > > > > It is, and i agree, for instance here is the lh.cortex.label file > > > > #label , from subject ?? > > 149955 > > 22 -10.374 55.016 3.203 0.0000000000 > > 112 -6.294 36.386 -7.809 0.0000000000 > > 114 -6.137 38.556 13.808 0.0000000000 > > 247 -11.304 45.214 -2.709 0.0000000000 > > 248 -6.278 39.973 2.192 0.0000000000 > > 249 -10.766 45.545 6.476 0.0000000000 > > 507 -11.087 42.990 18.865 0.0000000000 > > > > On 6/1/12, Bruce Fischl<fis...@nmr.mgh.harvard.edu> wrote: > >> that is the rh.cortex.label file? It doesn't look like it.... > >> > >> On Fri, 1 Jun 2012, mdkrue...@uwalumni.com > >> wrote: > >> > >>> Bruce- > >>> > >>> Here you go. Subjects recoded. > >>> > >>> Graph: name > >>> > >>> Data: path > >>> Variable: Subject > >>> Measurement: external > >>> subject id, class id, variable value, measurement value, standard > >>> deviation > >>> ------------ > >>> S1 Cl1 0.0 3.10522500831 0.268702566292 > >>> S2 Cl1 1.0 2.67585065105 0.396833961125 > >>> S3 Cl1 2.0 3.07631433273 0.173949345568 > >>> S4 Cl1 3.0 2.85668014067 0.0907729539181 > >>> S5 Cl1 4.0 3.24184323479 0.212597547853 > >>> S6 Cl1 5.0 2.54176559894 0.111183384791 > >>> S7 Cl1 6.0 2.87165045086 0.137271513295 > >>> S8 Cl1 7.0 2.72165358457 0.128648203321 > >>> > >>> On 6/1/12, Bruce Fischl<fis...@nmr.mgh.harvard.edu> wrote: > >>>> something like this: > >>>> > >>>> head ~/local_subjects/bruce/label/rh.cortex.label > >>>> #!ascii label , from subject vox2ras=TkReg > >>>> 141813 > >>>> 0 11.129 -93.761 -16.820 0.0000000000 > >>>> 1 11.136 -93.912 -16.623 0.0000000000 > >>>> 2 10.755 -93.913 -16.573 0.0000000000 > >>>> 3 11.696 -93.374 -17.237 0.0000000000 > >>>> 4 11.022 -93.203 -16.969 0.0000000000 > >>>> 5 11.020 -93.855 -17.042 0.0000000000 > >>>> 6 10.248 -93.745 -16.712 0.0000000000 > >>>> 7 11.591 -93.603 -17.551 0.0000000000 > >>>> > >>>> > >>>> > >>>> and please cc the list so others can answer! > >>>> On Fri, 1 Jun 2012, > >>>> mdkrue...@uwalumni.com wrote: > >>>> > >>>>> Bruce- > >>>>> The partition does not appear to be full, although we have been > having > >>>>> issues with migrating data so > >>>>> that could be a source of the issue. The rh.cortex.label does exist > and > >>>>> is > >>>>> located within the subject's > >>>>> label dir. As for the first couple of lines, I am unsure what you are > >>>>> asking for. > >>>>> > >>>>> Thanks for the quick response! > >>>>> > >>>>> Best- > >>>>> Michael > >>>>> > >>>>> On Fri, Jun 1, 2012 at 10:26 AM, Bruce Fischl > >>>>> <fis...@nmr.mgh.harvard.edu> > >>>>> wrote: > >>>>> Hi Michael > >>>>> > >>>>> can you check to see that your partition is not full? Does the > >>>>> rh.cortex.label file exist > >>>>> in that subject's label dir? If so, what are the first couple > of > >>>>> lines? > >>>>> > >>>>> cheers > >>>>> Bruce > >>>>> > >>>>> On Fri, 1 Jun 2012, mdkrue...@uwalumni.com wrote: > >>>>> > >>>>> To anyone who can help - > >>>>> I am trying to tun a GLM on a set of data and am > currently > >>>>> receiving an error > >>>>> during the mri_surf2surf > >>>>> portion. When running this portion i receive an error ( > >>>>> could > >>>>> not scan # of > >>>>> lines from (path to > >>>>> rh.cortex.label)). This does not happen when running > this > >>>>> portion for the lh, > >>>>> only the right. I am > >>>>> unable to find any information on this error on the > mailing > >>>>> list so im hoping > >>>>> someone can help! > >>>>> > >>>>> Best- > >>>>> Michael Kruepke > >>>>> > >>>>> -- > >>>>> Michael D. Kruepke > >>>>> PhD - University of Illinois at Urbana-Champaign > >>>>> BA - Psych - University of Wisconsin-Madison > >>>>> mdkrue...@gmail.com > >>>>> (262)-483-7449 > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> The information in this e-mail is intended only for the person to > whom > >>>>> it > >>>>> is > >>>>> addressed. If you believe this e-mail was sent to you in error and > the > >>>>> e-mail > >>>>> contains patient information, please contact the Partners Compliance > >>>>> HelpLine at > >>>>> http://www.partners.org/complianceline . If the e-mail was sent to > you > >>>>> in > >>>>> error > >>>>> but does not contain patient information, please contact the sender > and > >>>>> properly > >>>>> dispose of the e-mail. > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> -- > >>>>> Michael D. Kruepke > >>>>> PhD - University of Illinois at Urbana-Champaign > >>>>> BA - Psych - University of Wisconsin-Madison > >>>>> mdkrue...@gmail.com > >>>>> (262)-483-7449 > >>>>> > >>>>> > >>>>> > >>> > >>> > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Michael D. Kruepke PhD - University of Illinois at Urbana-Champaign BA - Psych - University of Wisconsin-Madison mdkrue...@gmail.com (262)-483-7449
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