Hi Bruce, Yes i can run ls -l in the directory
2013/7/10 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Hi Fatma > > are you sure you don't have a typo in the path? Can you run ls -l on that > file? > Bruce > > On Wed, 10 Jul 2013, fatma zribi wrote: > > >> >> ---------- Forwarded message ---------- >> From: fatma zribi <zribi.fa...@gmail.com> >> Date: 2013/7/10 >> Subject: Re: [Freesurfer] how to use mris_register? >> To: Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> >> >> Hi Bruce, >> >> Thank you very much for your help but it still don't work. >> >> mris_register s000_open_brain_sanlm_+TIR_**normlalized/surf/lh.sphere >> avg_all_subjects_SD/lh.reg.**template.tif lh.sphere_reg >> >> $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ >> $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ >> reading surface from s000_open_brain_sanlm_+TIR_** >> normlalized/surf/lh.sphere... >> MRISread(s000_open_brain_**sanlm_+TIR_normlalized/surf/**lh.sphere): >> could not open file >> No such file or directory >> mris_register: could not read surface file s000_open_brain_sanlm_+TIR_** >> normlalized/surf/lh.sphere >> No such file or directory >> >> note that the file exist in the folder and i have changed the SUBJECT_DIR >> to the appropriate folder >> >> Thank you very much for your help >> >> with best regards, >> >> Fatma >> >> >> >> 2013/7/9 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> Hi Fatma >> >> don't use the -1 flag if you are regtering to a template, only if >> you are registering individual surfaces to each >> other. You probably want the output to be named lh.sphere_reg and >> go in the s000/surf dir. >> >> cheers >> Bruce >> >> On Tue, 9 Jul 2013, fatma zribi wrote: >> >> Dear Mr, >> >> When I execute mris_register to register one subject to a >> template., I have this message of error: >> >> mris_register -1 s000/surf/lh.sphere >> avg_all_subjects_SD/lh.reg.**template.tif sphere_reg >> treating target as a single subject's surface... >> $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ >> $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ >> reading surface from s000_open_brain_sanlm_+TIR_** >> normlalized/surf/lh.sphere... >> >> MRISread(s000_open_brain_**sanlm_+TIR_normlalized/surf/**lh.sphere): >> could not open file >> No such file or directory >> mris_register: could not read surface file s000/surf/lh.sphere >> No such file or directory >> >> note that the file exist in the specifeid SUBJECT_DIR >> >> Thank you for your help >> >> Fatma >> >> >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >>
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