Hi Rachel, I have deleted your previous msg and my response, so I don't
know exactly what this is referring to. From the info below, it looks
like you need a backslash ("\") after lh.oribitalfrontal.label. Note
that you should not specify both --cortex and --label
doug
On 7/31/13 7:20 PM, Rachel Jonas wrote:
Hi Doug,
Thanks for the response. Here is my glmfit command:
mri_glmfit \
--y lh.22q_age.thickness.10.mgh \
--fsgd 22q_age.fsgd dods\
--C 22q_age_2.mtx \
--surf fsaverage lh \
--label lh.orbitofrontal.label
--cortex \
--glmdir lh.22q_age_OFC.glmdir
And here is the error message:
gdfReadHeader: reading 22q_age.fsgd
INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done.
Continuous Variable Means (all subjects)
0 age 12.7292
Class Means of each Continuous Variable
1 HC 12.8261
2 22Q 12.6400
INFO: gd2mtx_method is dods
Reading source surface
/u/home/FMRI/cbearden/data/22q/Analyses/sMRI/fsaverage/surf/lh.white
ERROR: must specify GLM output dir
[racheljo@login3 sMRI]$ --cortex \
? --glmdir lh.22q_age_OFC.glmdir
--cortex: Command not found.
Thanks!
Rachel
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