Hi Bruce, Our system is Centos 6. We can try it on another system today, although we don't have another system that is as fast/efficient as our Centos 6 machine.
Sherryse -- Sherryse Corrow, Ph.D. / Postdoctoral Fellow Human Vision and Eye Movement Lab Department of Ophthalmology & Visual Sciences UBC/VGH Eye Care Centre 360A-2550 Willow Street Vancouver, BC, V5Z 3N9 Tel: 604-875-4111 ext 67672 Cell: 604-315-6717 [email protected] On 1/21/14 1:42 PM, "Bruce Fischl" <[email protected]> wrote: >Hi Sherryse > >what system are you running on? I saw this on an ubuntu system and it >seemed to be a bug in one of the 3rd party libraries that we don't have >access to. Can you try it on another machine, like a centos 6 one? > >thanks >Bruce > >On Tue, >21 Jan 2014, Sherryse Corrow wrote: > >> We are doing some cortical flat mapping in FreeSurfer. We are following >> these instructions: >> http://openwetware.org/wiki/Beauchamp:FreeSurfer#Creating_Flat_Maps. >>We are >> able to create the flat map without a problem. However, just before we >>are >> able to do the last step "Save the patch by clicking File->Patch->Save >>Patch >> As" the process crashes and the flat map is lost. >> >> In the terminal, we see this error: >> >> surfer: filling (ctrl-c to cancel)...... done, 154370 vertices filled >> >> #Filling the uncut area was successful. >> surfer: ripped 12057 vertices >> tksurfer.bin: tnl/t_vertex.c:407: update_input_ptrs: Assertion >> `a[j].inputstride == vptr->stride' failed. >> Abort (core dumped) >> >> So, the uncut area is filled and before we have time to click File, >>Save As, >> etc. . . the process crashes and we have to start the process over >>again. >> >> Any suggestions? Thanks for your time. >> -- >> Sherryse Corrow, Ph.D. / Postdoctoral Fellow >> Human Vision and Eye Movement Lab >> Department of Ophthalmology & Visual Sciences >> UBC/VGH Eye Care Centre >> 360A-2550 Willow Street >> Vancouver, BC, V5Z 3N9 >> Tel: 604-875-4111 ext 67672 >> Cell: 604-315-6717 >> [email protected] >> >> > > >The information in this e-mail is intended only for the person to whom it >is >addressed. If you believe this e-mail was sent to you in error and the >e-mail >contains patient information, please contact the Partners Compliance >HelpLine at >http://www.partners.org/complianceline . If the e-mail was sent to you in >error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
