Dear Doug,
Thank you for your email. I am running into trouble using mri_segstats -
the command you sent (mri_segstats --i lh.thickness --slabel subject lh
lh.BA3a.label --id 1
--sum table.dat) gave me the error:
"No such file or directory
mri_segstats: could not open label file lh.BA3a.label"
I tried substituting a single subject in place of "subject" in the command
you sent I get the same error.
I confirmed that the lh.BA3a.label file is in the label subfolder for the
individual subject.
I would like to output the volume, thickness, and area for all the broadman
areas (especially 35). Any advice you can provide on how to do this would
be a great help.
Thank you for all your help.
Sal
Date: Thu, 08 Jan 2015 11:37:11 -0500
From: Douglas N Greve <gr...@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Possible to generate table of statistics for
specific label?
To: freesurfer@nmr.mgh.harvard.edu
Message-ID: <54aeb237.9010...@nmr.mgh.harvard.edu>
Content-Type: text/plain; charset=windows-1252; format=flowed
Yep, you can use somehting like
mri_segstats --i lh.thickness --slabel subject lh lh.BA3a.label --id 1
--sum table.dat
doug
On 01/08/2015 08:50 AM, Salil Soman wrote:
> Dear List Members,
>
> Is it possible to generate tables of volume / area / thickness
> information for a specific label that is not included in aparcstats or
> asegstats using command line code in freesurfer (e.g. the broadman
> areas)? If so, could someone point me to the instructions?
>
> Thank you for your time and consideration.
>
> Best wishes,
>
> Sal
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