If you're just doing a one-sample group mean, then use --osgm instead of
--X and --C
doug
On 4/23/15 7:47 PM, ghazal.ki...@alumni.ubc.ca wrote:
Hi,
We are working on the analysis step of a project, in which we are
interested in the brain activation pattern in response to five
different body part movement. We have done a group analysis using FSL
(N=10), to see the average activation pattern for each body part.
However, we are having problem viewing the average group activation
pattern on the FreeSurfer inflated brain. We have tried to use the
steps at the last section of the following link
(http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FreeSurfer
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FreeSurfer>); however, we are
not sure about the design and contrast matrix in Step 4.
We were wondering if you have any suggestions about how to view the
group data on the inflated brain?
We greatly appreciate your response.
Thanks,
Ghazal Kiani
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
