It will behave differently as some of the parameters change depending upon whether it is a T2 or FLAIR. This will only affect the surface creation
On 02/02/2017 05:19 PM, Joe Necus (PGR) wrote: > > Hello, > > > I am running recon-all on the latest version of freesurfer (Version 6) > and would like to know whether there is any difference between using > the -T2 -T2Pial and -Flair flags. > > > I am currently running recon-all with a T1 and FLAIR image, but have > used the -T2 -T2pial flags and would like to know whether I need to go > back and instead re-run with the -FLAIR flag instead. > > > Thanks a lot, > > Joe > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
