Hi Carol, There is actually a way to search in batch mode. The tool for that is the Table Browser. To get to the table browser, click on "Tables" from the blue navigation bar.
Set the clade, genome, and assembly that you are interested in. Then set the following: group: Genes and Gene Prediction Tracks track: UCSC Genes table: knownGene region: genome identifiers (names/accessions): click on "Paste list" and then paste in your list of genes according to the instructions. Click on "submit" output format: hyperlinks to Genome Browser Click "get output" This will print out a page with all the genes and their links to the browser. Hope this helps! If you have further questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "liyanli" <[email protected]> To: [email protected] Sent: Tuesday, March 1, 2011 10:05:36 PM Subject: [Genome] Question about UCSC Genome Browser batch mode Hi, I'm new to UCSC Genome Browser, and want to search about 50 genes by http://genome.ucsc.edu/cgi-bin/hgTracks Well, currently I manually input gene name 40 times, and click "jump" button on the page, which is a little time consuming. So my question is, is there a batch mode to search genes by name? It would be of great help and brilliant. Thanks a ton! Carol Lee _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
