Hi Tim,
You can retrieve this information from the Table Browser (from main
page, click on "Tables" on the top blue navigation bar). After selecting
a clade, genome, and assembly of your choice, set the following:
group: Genes and Gene Prediction Tracks
track: choose a gene prediction track you would like to use (I'll use
'UCSC Genes' for this example)
table: the default table will be the primary table for that track
('knownGene' in this case)
region: genome (or enter the position)
identifiers (names/accessions): click 'paste list' and enter the
identifier(s), click 'submit'
output format: sequence
output file: enter a filename to save your results to a file, or leave
blank to display results in the browser
Click 'get output'. On the following page, select 'genomic' and click
'submit'. Select the appropriate options (5'UTR Exons, CDs Exons, 3'UTR
Exons, etc). Click 'get sequence'.
More information on how to use the Table Browser can be found here:
http://genome.ucsc.edu/cgi-bin/hgTables#Help
Please contact us again at [email protected] if you have any further
questions.
---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group
On 8/9/2011 9:11 AM, Liu, Qing-Rong (NIH/NIDA/IRP) [E] wrote:
> Dear Sir,
>
> Would you please tell me how to down load exon sequences from a unique gene?
>
> Best regards,
>
> Qing-Rong (Tim) Liu, Ph.D.
> Staff Scientist
> Behavior Neuroscience Research Branch
> NIDA/NIH
> 251 Bayview Blvd, Suite 200
> Baltimore, MD21224
> Tel: (443) 740-2731
> Fax: (443) 740-2827
>
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>
_______________________________________________
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