Hi, Sorry for the inconvenience caused. The output from the script suggests that the pdb file is written. However when i open the pdb file the solvent box is not created in full. Since i could not provide the structure on the mailing list it was a bit difficult for the other person to comprehend the problem.
Anyways the problem was that i ran out of disk space in the directory while writing the output pdb file. The genbox script did not give me a warning that the whole file was not written due to memory issues. I was therefore trying to figure out if i was giving any wrong parameters. I moved to a different disk with a higher ceiling and it worked in the desired manner.Again,I am extremely sorry for the inconvenience caused..Sincerely Prasenjit Prasenjit Kumar Mukherjee Graduate Student Department of Medicinal Chemistry School of Pharmacy University of Mississippi USA Cell - 662 380 0146 Office - 662 915 1286 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
