Hmm, now I am getting a different error... Elapsed time is 1.67516 seconds. Elapsed time is 2.38414 seconds.
error: out of memory or dimension too large for Octave's index type Timothy Hendrickson Neuroimaging Analyst/Staff Scientist University of Minnesota Informatics Institute University of Minnesota Bioinformatics M.S. Candidate Office: 612-624-0783 Mobile: 507-259-3434 (texts okay) On Fri, Aug 17, 2018 at 2:04 PM, Glasser, Matthew <glass...@wustl.edu> wrote: > I have attached an updated version of read_avw_img.m that forces matlab to > retain the same precision as the input file rather than converting > everything to doubles. > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Timothy > Hendrickson <hendr...@umn.edu> > Date: Friday, August 17, 2018 at 1:58 PM > To: "hcp-users@humanconnectome.org" <HCP-Users@humanconnectome.org> > Subject: [HCP-Users] FSL FIX no memory with hcp_fix_multi_run > > Hello, > > I am attempting to run FIX cleanup on a rather large dataset (several fMRI > scans concatenated together via hcp_fix_multi_run) and am running into the > following error: > > * In fix_3_clean at 45 * > *Elapsed time is 1.153074 seconds.* > *Elapsed time is 1.077840 seconds.* > *Error using fread* > *Out of memory. Type HELP MEMORY for your options.* > > *Error in read_avw_img (line 24)* > > > > *Error in read_avw (line 34)* > > > > *Error in fix_3_clean (line 63)* > > > > *MATLAB:nomem* > > > How much memory does MATLAB require for this, and is there a way to change > this via an argument? > > -Tim > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
