Thanks for the advice!  We have been worried that wax was the issue.   I do 
leave them in 3 sets of xylene for 5 minutes each, you would think that would 
get rid of the wax.  Is it ok to leave them in the xylenes for longer than 5 
minutes each?   Thanks again for the advice to everyone who responded so far :)
 > From: tony.henw...@health.nsw.gov.au
> To: karabo...@hotmail.com; histonet@lists.utsouthwestern.edu
> Subject: RE: [Histonet] Question regarding staining of ligament tissue using 
> H&E. The nuclei in our ligament tissue is not staining consistently.
> Date: Mon, 23 Jan 2012 22:38:28 +0000
> 
> Have a look at the dewaxing part of the protocol. 
> Is the xylene removing all the wax? 
> If wax is incompletely removed from the sections then nuclei will be poorly 
> stained whereas, interestingly the eosin counterstain will seem to be 
> unaffected (though with a diligent look you will see poorer eosin staining as 
> well - look at the contrast between collagen, smooth muscle and nerves).
> 
> After xylene and alcohol, check the water rinsed slide. The tissue should not 
> be hydrophobic.
> 
> Regards 
> Tony Henwood JP, MSc, BAppSc, GradDipSysAnalys, CT(ASC), FFSc(RCPA) 
> Laboratory Manager & Senior Scientist 
> Tel: 612 9845 3306 
> Fax: 612 9845 3318 
> the children's hospital at westmead
> Cnr Hawkesbury Road and Hainsworth Street, Westmead
> Locked Bag 4001, Westmead NSW 2145, AUSTRALIA 
> 
> 
> -----Original Message-----
> From: histonet-boun...@lists.utsouthwestern.edu 
> [mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Kara Lee
> Sent: Tuesday, 24 January 2012 5:59 AM
> To: histonet@lists.utsouthwestern.edu
> Subject: [Histonet] Question regarding staining of ligament tissue using H&E. 
> The nuclei in our ligament tissue is not staining consistently.
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> Tissue is fixed in 10% NBF before being vacuum embedded in paraffin. Our 
> tissue is cut at 10microns, placed on charged slides, then placed on a slide 
> warmer over night.  The slides are then place in xylenes 3 times for 2 
> minutes, then stained as follows..Step 4:  100% Alcohol - 2 X 2 minutes 
> each,Step 5:  95% Alcohol - 2 X 2 minutes each,Step 6:  DI H2O - 2 X 2 
> minutes each,Step 7:  Harris Hematoxylin - 1 X 1.5 minutes,Step 8:  Wash 
> gently in DI H2O until"Grape Juice" color is gone, Step 9:  Acid Alcohol - 3 
> Dips, Step 10:  Wash gently in DI H2O - 1 X 2 minutes, Step 11:  Bluing - 10 
> Dips, Step 12:  Rinse in running DI H2O - 1 X 2minutes, Step 13: 95% Alcohol 
> - 1 X 2 minutes ,Step 14:  Working Eosin - 1 X 2 minutes, Step 15: 95% 
> Alcohol - 2 X 2 minutes each, Step 16:  100% Alcohol - 3 X 2 minutes 
> each,Step 17: Xylene Dips - 3 X 5 minutes each, Step 18:  Coverslip.  
> Our core lab has recently had a change in pressure for the DI port and water 
> comes out very hard, making gentle washing impossible. The reagents are new.  
> We have tried increasing the staining time in the hematoxylin to 2 minutes 
> and reducing the acid alcohol dips to 2. 
> Our hematoxylin is not consistently staining the nuclei in the ligament 
> tissue.  Some are good, some are bad.  
>  
> Can someone make any suggestions?
>                                                                               
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