It is possible that this is due to "Biotin nuclei" where excess biotin is found 
in the nuclei of some cells, see below:

Optically clear nuclei have been reported in endometrial epithelium associated 
with first and second trimester abortions (Sickel & di Sant'Agnese 1994). 
Optically clear nuclei have also been found in different types of tissues of 
diverse organs such as ovary, thyroid and lung (Nakatani et al 1994, Mount & 
Cooper 2001). The optically clear nuclei contain excess biotin.

Endogenous biotin immunoreactivity is generally not visualized in formalin 
fixed, paraffin-embedded tissues unless a heat-induced antigen retrieval step 
has been introduced (Mount & Cooper 2001).

In this placental section, optically clear nuclei (containing biotin) bind to 
the streptavidin of the ABC technique giving a reaction similar to that seen 
with CMV containing cells. If a polymer method (or even the original 
Sternberger's PAP method) is used then this anomalous staining will disappear, 
thus allowing confident demonstration of CMV infected nuclei.

The false-positive staining pattern caused by endogenous biotin can be 
cytoplasmic or nuclear. A report of positive immunoreactivity of hepatocellular 
carcinomas for inhibin was later determined to be a false-positive finding due 
to cytoplasmic endogenous biotin. Steroid cell tumours of the ovary were found 
to demonstrate endogenous biotin cytoplasmic staining in 36% of cases. 
Immunoreactivity for anti-Herpes virus immunohistochemical staining in a series 
of endometria was also later determined to be a false-positive result due to 
biotin. The prominent intranuclear inclusions, resembling herpes virus 
cytopathic effect, were caused by intranuclear biotin and not viral particles. 
Similar false positive staining for CMV in products of conception has also been 
reported (Mount & Cooper 2001). 

False-positive staining can be cytoplasmic or nuclear. When cytoplasmic, the 
appearance of the false signal is that of a dull brown granular or fluffy 
staining pattern. If this quality of staining is observed with several 
different antibodies, endogenous staining by biotin should be considered. When 
nuclear, a false-positive reaction may be associated with optically clear 
nuclei identified on H&E stained sections. False-positive staining due to 
endogenous biotin, however, does not occur in a cell membrane pattern (Mount & 
Cooper 2001).

Mount SL & Cooper K (2001) "Beware of biotin: a source of false-positive 
immunohistochemistry" Current Diagnostic Pathology  7:161-167.
Nakatani et al (1994) Am J Surg Pathol 18(6):637-642.
Sickel & di Sant'Agnese (1994) Arch Pathol Lab Med 118:831-833


Regards 
Tony Henwood JP, MSc, BAppSc, GradDipSysAnalys, CT(ASC), FFSc(RCPA) 
Laboratory Manager & Senior Scientist 
Tel: 612 9845 3306 
Fax: 612 9845 3318 
the children's hospital at westmead
Cnr Hawkesbury Road and Hainsworth Street, Westmead
Locked Bag 4001, Westmead NSW 2145, AUSTRALIA 

-----Original Message-----
From: histonet-boun...@lists.utsouthwestern.edu 
[mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Eva Permaul
Sent: Monday, 23 July 2012 11:40 PM
To: histonet@lists.utsouthwestern.edu
Subject: [Histonet] Secondary antibody causing nuclear staining?

Hello,

I have noticed that our biotinylated secondary antibodies on occasion cause 
nuclear staining in some samples. Why is this? It is not every time so I find 
it rather stange. Anyone know why this is happening and what I can do to avoid 
it?

Thank you for any suggestion,
Eva Permaul
Georgetown University
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