Hi Julie,
Try increasing your deparaffinization times, sometimes there is just not enough 
time in xylene so subsequent staining can be very inconsistent like described.


Kari Kienitz HT, (ASCP)
Histology Laboratory
Gastroenterology-EAST
The Oregon Clinic
1111 NE 99th Ave
Portland, OR  97220
503.935.8311
kkien...@orclinic.com




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________________________________________
From: histonet-boun...@lists.utsouthwestern.edu 
[histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Julie Cohen 
[juc2...@med.cornell.edu]
Sent: Wednesday, April 01, 2015 9:06 AM
To: histonet@lists.utsouthwestern.edu
Subject: [Histonet] inconsistent H&E staining

Hi,

I made slides of paraffin-embedded mouse small intestine (Swiss rolls), and 
stained them with Hematoxylin and Eosin.  Parts of the tissue on the same slide 
are stained dark with good structure.  Other areas look washed out with poor 
structure.  We realize that some of this could be caused by the 
orientation/structures captured, but similar tissue type looks paler as well.

Has anyone had a similar experience, and could suggest an explanation for me to 
give to our client?  At first we thought it might be due to poor fixation, 
since the centers of tightly-wound rolls were affected, but we also observed 
this in the outer parts of loosely wound rolls.  I soak the blocks before 
sectioning; could non-uniform swelling result in variations of the section 
thickness?  (These are 7 microns thick.)

Apologies if this information is available somewhere else; I tried 
unsuccessfully searching the archives.

Thank you,

Julie Cohen

Research Lab Tech
EM Core Facility
Weill Cornell Medical College
1300 York Avenue, Room A-105
New York, NY 10021
lab: 212-746-6146
email: juc2...@med.cornell.edu<mailto:juc2...@med.cornell.edu>

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