Following is a workaround script:

import hudson.tasks.*
import org.jvnet.hudson.plugins.fortify360.FPRPublisher
   
for (item in Jenkins.instance.items) {
  for (Publisher publisher : item.publishersList) {
    if (publisher instanceof FPRPublisher) {
      println("nullifying FPRPublisher.f360projId of $item.name");
      publisher.f360projId = null;
      item.publishersList.replace(publisher);
    }
  }
}
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