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This problem is occurring because Jenkins does not know about the root certificate for your Jira server.
You can see from your openssl command that Jira is returning what openssl is considering is a self signed certificate. If you were to attempt to do access this URL from your browser you would be asked if you wished to accept this certificate.
Because there is no interaction there is no way for the underlying Java SSL implementation to accept your Jira certificate and therefore you get the exception you have.
You have two choices to correct this problem.
1. Obtain an approved certificate for your jura server signed by a recognised authority
2. Add the jira server certificate to the keystore for your JRE implementation that Jenkins is using (under tomcat maybe)
See the keytool command for adding to your keystone.
The keystone is usually located in jre/lib/security/cacerts with a default password of changeit