Maybe I have messed something up... I get
java.lang.NoSuchMethodError: org.openscience.cdk.Atom.getX3d()D
at
org.jmol.adapter.cdk.CdkModelAdapter$AtomIterator.getX(CdkModelAdapter.java:243)
at
org.openscience.jmol.viewer.datamodel.FrameBuilder.buildFrame(FrameBuilder.java:68)
at
org.openscience.jmol.viewer.managers.ModelManager.setClientFile(ModelManager.java:81)
at
org.openscience.jmol.viewer.JmolViewer.openClientFile(JmolViewer.java:1001)
I have included the following jars in my runtime config:
<library name="jars/CDK/cdk-render.jar">
<library name="jars/CDK/cdk-apps.jar">
<library name="jars/CDK/cdk-core.jar">
<library name="jars/CDK/cdk-experimental.jar">
<library name="jars/CDK/cdk-extra.jar">
<library name="jars/CDK/cdk-io.jar">
<library name="jars/CDK/cdk-standard.jar">
<library name="jars/CDK/cdk-test.jar">
<library name="jars/CDK/cdk-libio.jar">
<library name="jars/Jmol.jar">
I thought there was some kind of conflict since Jmol.jar includes a lot
of CDK-packages. Anyway, when I replace Jmol.jar with JmolApplet.jar,
all works fine when I do a viewer.openStringInline with a
SmarterModelAdapter. Can you make any sense of this?
Well, looking at the classes I see the following inconsistencies (if
that is what they are):
in my cdk-core.jar:
org.openscience.cdk.Atom: getX2D()
in Jmol.jar
org.openscience.cdk.Atom: getX2d()
Could this be the answer to this? How should I resolve this? I might be
using outdate cdk-core.jar but the Jmol.jar is taken from v10beta16...
What I would like is to have a Jmol and CDK in separate jars, maybe I
should take the time to build my own Jmol as well...
Thanks for the help!
.../Ola
On Fri, 2004-11-12 at 15:34, E.L. Willighagen wrote:
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> On Friday 12 November 2004 15:17, Ola Spjuth wrote:
> > I'm having conflicts between CDK and Jmol jars when I integrate them in
> > my SWT/Swing application.
>
> What kind of conflicts? I did not have those...
>
> > On a proposal from Miguel, I tried using the
> > latest JmolApplet (v10rel16) since it does not contain any
> > org.openscience.cdk classes, and it worked out just fine when using the
> > SmarterModelAdaptor.
>
> So using a file format interface?
>
> > However, when trying out the examples for JmolCdk
> > integration on the wiki (Thanks, Egon!) I needed to add the
> > org.jmol.adapter.cdk.CdkJmolAdapter class, which is not present in the
> > JmolApplet but only in Jmol.jar.
> >
> > So, my proposal is to add the CdkJmolAdapter to JmolApplet.jar too,
>
> That only makes sense if the applet could use the CdkJmolAdapter too, but I
> don't think there is a <param> for that...
>
> And it would require something like:
>
> <applet bla codeBase="JmolApplet.jar:cdk-io.jar" bla />
>
> BTW, Miguel, did you ever work something out for
>
> <applet bla codeBase="JmolApplet.jar:JmolAppletCMLExtension.jar" bla /> ?
>
> where the second jar would contain the gnujaxp and CML stuff, and the first
> not?
>
> Egon
>
> - --
> [EMAIL PROTECTED]
> - ---------------------------------------
> CDK: http://cdk.sf.net/
> JChemPaint: http://jchempaint.sf.net/
> Jmol: http://www.jmol.org/
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