/* $RCSfile$
 * $Author$
 * $Date$
 * $Revision$
 *
 * Copyright (C) 2000-2005  The Jmol Development Team
 *
 * Contact: jmol-developers@lists.sf.net
 *
 *  This library is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public
 *  License as published by the Free Software Foundation; either
 *  version 2.1 of the License, or (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public
 *  License along with this library; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 *  02111-1307  USA.
 */

import java.awt.Container;
import java.awt.Dimension;
import java.awt.Graphics;
import java.awt.Rectangle;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;

import javax.swing.JFrame;
import javax.swing.JPanel;
import javax.vecmath.Point3d;

//import org.jmol.adapter.cdk.CdkJmolAdapter;
import org.jmol.api.JmolAdapter;
import org.jmol.api.JmolViewer;

import org.openscience.cdk.Atom;
import org.openscience.cdk.Molecule;

/**
 * A example of integrating the Jmol viewer into a CDK application.
 *
 * <p>I compiled/ran this code directly in the examples directory by doing:
 * <pre>
 * javac -classpath ../Jmol.jar CDKIntegration.java
 * java -cp .:../Jmol.jar:../../../CDK/cdk/dist/jar/cdk-all.jar CDKIntegration
 * </pre>
 *
 * @author Miguel <mth@mth.com>
 * @author Egon <egonw@jmol.org>
 */
public class CDKIntegration {
    
    public static void main(String[] argv) {
        
        JFrame frame = new JFrame("CDK Integration Example");
        frame.addWindowListener(new ApplicationCloser());
        Container contentPane = frame.getContentPane();
        JmolPanel jmolPanel = new JmolPanel();
        contentPane.add(jmolPanel);
        frame.setSize(300, 300);
        frame.setVisible(true);
        
        JmolViewer viewer = jmolPanel.getViewer();

        viewer.evalString(strScript);
        
     // create a CDK data object: ChemFile        
        Molecule methane = new Molecule();
        Atom atom = new Atom("C");
        atom.setPoint3d(new Point3d( 0.257,-0.363, 0.000));
        methane.addAtom(atom);
        atom = new Atom("H");
        atom.setPoint3d(new Point3d( 0.257, 0.727, 0.000));
        methane.addAtom(atom);
        atom = new Atom("H");
        atom.setPoint3d(new Point3d( 0.771,-0.727, 0.890));
        methane.addAtom(atom);
        atom = new Atom("H");
        atom.setPoint3d(new Point3d( 0.771,-0.727,-0.890));
        methane.addAtom(atom);
        atom = new Atom("H");
        atom.setPoint3d(new Point3d(-0.771,-0.727, 0.000));
        methane.addAtom(atom);
        //methane.setProperty("methane", methane);

        // then send it to the Jmol Viewer
        viewer.openClientFile("", "", methane);
    }
    
    final static String strScript = "select *; spacefill on;";

    static class ApplicationCloser extends WindowAdapter {
        public void windowClosing(WindowEvent e) {
            System.exit(0);
        }
    }

    static class JmolPanel extends JPanel {
        JmolViewer viewer;
        JmolAdapter adapter;
        
        JmolPanel() {
            // use CDK IO
            adapter = new CdkJmolAdapter();
            viewer = JmolViewer.allocateViewer(this, adapter);
        }
    
        public JmolViewer getViewer() {
            return viewer;
        }
    
        final Dimension currentSize = new Dimension();
        final Rectangle rectClip = new Rectangle();
    
        public void paint(Graphics g) {
            viewer.setScreenDimension(getSize(currentSize));
            g.getClipBounds(rectClip);
            viewer.renderScreenImage(g, currentSize, rectClip);
        }
    }
}