On 22 July 2010 15:57, Tim Vandermeersch <[email protected]> wrote:
> On Thu, Jul 22, 2010 at 3:58 PM, Noel O'Boyle <[email protected]> wrote:
>> Hello Tim,
>>
>> I've just been checking OBAlign in trunk and writing the doxygen docs.
>>
>> There's just one missing feature - would it be possible for you to
>> alter the isomorphism mapper so that it can take an OBBitVec as a
>> mask?
>
> Yes, I had planned this but haven't done this yet. I'll add a
> SetQueriedMask method.

Great.

>> It's not usual to include the hydrogens in the calculate of the RMSD,
>> so I would like to be able to pass an OBBitVec to the mapper that
>> would just include the heavy atoms. Naturally, this should also speed
>> up the mapping in the general case.
>
> Correct.
>
> Are you back from your holiday?

Yes - I have obtained my Vitamin D quotient for the year :-)

> Tim
>
>> - Noel
>>
>

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