NCBO Seminar Series - Meeting Info for Wed, July 15! Hello All! 

The next NCBO Seminar Series will be held Wednesday, July 15, at 10am PST . The 
seminar will be presented by Clement Jonquet , of the NCBO. The title of the 
talk will be Prototyping a Biomedical Ontology Recommender Service. 

Below is Information on how to join this week’s online meeting and accompanying 
teleconference. Please note there will not be a VOIP option, and attendees must 
call into the teleconference. 

For more information about the series, please visit the Seminar Series home 
page: http://www.bioontology.org/seminar_series.html . Information on how to 
join this week’s webinar is given below. To receive information on or to join 
any future meetings, please contact me at ska...@stanford.edu . 

This series aims to showcase new projects, technologies and ideas in biomedical 
ontology by featuring the work of a different collaborator each session. It is 
a webinar held online, and as such is open to anyone interested, regardless of 
location or affiliation. The sponsoring organization, the National Center for 
Biomedical Ontology ( http://www.bioontology.org ), is a consortium of leading 
biologists, clinicians, informaticians, and ontologists who develop innovative 
technology and methods allowing scientists to create, disseminate, and manage 
biomedical information and knowledge in machine-processable form. 

We hope to see you there. 


Prototyping a Biomedical Ontology Recommender Service 
(paper presented at Bio-Ontologies: Knowledge in Biology, SIG, ISMBECCB 2009 ) 

As the use of ontologies for annotation of biomedical datasets rises, a common 
question researchers face is that of identifying which ontologies are relevant 
to annotate their datasets. The number and variety of biomedical ontologies is 
now quite large and it is cumbersome for a scientist to figure out which 
ontology to (re)use in their annotation tasks. In this paper we describe an 
early version of an ontology recommender service, which informs the user of the 
most appropriate ontologies relevant for their given dataset. We provide 
results to illustrate that situation. The recommender service uses a semantic 
annotation based approach and scores the ontologies according to those 
annotations. The prototype service can recommend ontologies from UMLS and the 
NCBO BioPortal and is accessible at http://bioontology.org/tools.html . 


Topic: NCBO Seminar Series 
Date: The 1st & 3rd Wednesday of every 1 months 
Time: 10:00 am, Pacific Daylight Time (San Francisco, GMT-07:00) 
Meeting Number: 929 613 752 
Meeting Password: ncbomeeting 

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You can contact me at: 
ska...@stanford.edu 
1-650-736-0786 

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