On 4/21/2020 2:15 PM, Rick - wrote:
If you download the 7.5' quads in the tif format you get separate rasters with the image in one and the usual topographic layers in the other. According to the USGS, the geopdf was never meant to be a GIS compatible product. You can get the individual data layers from the National Map if you want to create your own custom version.

Just for completeness of the discussion -
You can use org2ogr to separate and save the layers. As Rick notes above, you can get all the underlying data from the National Map. Pulling out the layers with ogr2ogr will give you layers with the same extent as the quad you're interested in if that matters for some reason.

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