Get a SLURM batch file from someone there and make the appropriate changes to it. Best way to learn.
On Mon, Oct 3, 2016 at 2:10 PM, Dominik Schneider <dosc3...@colorado.edu> wrote: > I typically call Rscript inside an sbatch file. > > *batch_r.sh* > #! /bin/bash > > cd /home/<myusername>/aso_regression_project #make sure you change to your > correct working directory > Rscript scripts/run_splitsample-modeling.R > > > and on the commandline of the login node: > sbatch batch_r.sh > > > There are lots of slurm configurations you can specify. Google for them. > Just add these under the first line and modify as needed: > #SBATCH --qos= > #SBATCH --mem= > #SBATCH --mail-type=begin,end,abort > #SBATCH --mail-user=use...@email.com > #SBATCH --time= > #SBATCH --nodes= > #SBATCH --job-name=myjob > #SBATCH --output=/home/<username>/run-%A_%a.Sout #special output filename > > > Dominik > > > On Mon, Oct 3, 2016 at 3:03 AM, Sema Atasever <s.atase...@gmail.com> > wrote: > > > Dear Authorized Sir / Madam, > > > > I have an R script file in which it includes this lines: > > > > How can i to submit this R jobs via SLURM? Thanks in advance. > > > > *testscript.R* > > data=read.table("seqDist.50", header=FALSE)[-1] > > attach(data) > > d=as.matrix(data) > > library(cluster) > > cluster.pam = pam(d,6) > > table(cluster.pam$clustering) > > > > filenameclu = paste("outputfile", ".txt") > > write.table(cluster.pam$clustering, file=outputfile,sep=",") > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide http://www.R-project.org/ > > posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Erin Hodgess Associate Professor Department of Mathematical and Statistics University of Houston - Downtown mailto: erinm.hodg...@gmail.com [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.