I found a solution to my problem. I thought I would post it here. That will 
help me in 3 months when I have forgotten it or some other poor soul who 
stumbles across the same problem.

RawSeqBig<-RawSeqBig[RawSeqBig$ASSAY_ID %in% rejectrs$rs==FALSE,]

"Farrel Buchinsky" <[EMAIL PROTECTED]> wrote in message 
news:[EMAIL PROTECTED]
>I have a vector containg about 20 unique values. It is called rejectrs$rs.
> It is a factor
> I have a data frame with about 100000 rows.
> I want to exclude all rows where in variable rs the value is one of the 20
> on the exclude list. I thought this would work but none did.
>
> RawSeqBig<-subset(RawSeqBig,ASSAY_ID!=rejectrs$rs)
>
> RawSeqBig<-subset(RawSeqBig,ASSAY_ID!=list(rejectrs$rs))
>
>
> -- 
> Farrel Buchinsky
> Mobile: (412) 779-1073
>
> [[alternative HTML version deleted]]
>
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>

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