Dear all, I installed the amd64 cran2deb [1] JGR binaries on a fresh Debian testing, and JGR is missbehaving. When JGR starts up, one core of the CPU goes to 100% and stays there, even though I am keeping it idle and not performing any operation.
I tried JGR with both sun-java6-jdk and openjdk-6-jdk, debian-liv:/home/liviu# update-alternatives --config java There are 4 choices for the alternative java (providing /usr/bin/java). Selection Path Priority Status ------------------------------------------------------------ 0 /usr/lib/jvm/java-6-openjdk/jre/bin/java 1061 auto mode 1 /usr/bin/gij-4.3 43 manual mode 2 /usr/lib/jvm/java-6-openjdk/jre/bin/java 1061 manual mode * 3 /usr/lib/jvm/java-6-sun/jre/bin/java 63 manual mode 4 /usr/lib/jvm/java-gcj/jre/bin/java 1043 manual mode options 3 and 0, to no avail. After changing the java alternative, I also executed debian-liv:/home/liviu# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_14 Java home path : /usr/lib/jvm/java-1.5.0-gcj-4.3-1.5.0.0/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar Java library path: /usr/lib/../lib/gcj-4.3-90:/usr/lib/jni JNI linker flags : -L/usr/lib/../lib/gcj-4.3-90 -L/usr/lib/jni -ljvm JNI cpp flags : Updating Java configuration in /etc/R Done. Starting JGR via require(JGR) or the stand-alone script (/usr/local/lib/R/site-library/JGR/scripts/run) makes no difference. Neither running as user or as root. JGR will start and immediately begin using 100% of one CPU core. One thing that it complains of is: li...@debian-liv:~$ /usr/local/lib/R/site-library/JGR/scripts/run WARNING: org.rosuda.JRI.Mutex was unlocked by other thread than locked! This may soon lead to a crash... Could anyone suggest a way to work around this issue? Thank you, Liviu [1] http://www.mail-archive.com/debian-scie...@lists.debian.org/msg03306.html -- Do you know how to read? http://www.alienetworks.com/srtest.cfm Do you know how to write? http://garbl.home.comcast.net/~garbl/stylemanual/e.htm#e-mail _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian