On 27 May 2010 at 11:43, Paul Johnson wrote: | On Thu, May 27, 2010 at 8:24 AM, Dirk Eddelbuettel <e...@debian.org> wrote: | > | | > | > Ack, and my bad -- I should have checked. | > | > The packaging is much smarter than I gave it credit for and _does_ of course | | I'm running Ubuntu on 64bits at the moment and had no trouble building | the newer jags with Dirk's setup from the previous version of jags. | The new jags was not yet available in the package system on Friday, I
Whose package system? Debian had it as of May 12 and 18, respectively. jags (2.1.0-2) unstable; urgency=low * configure: Once again patched for sh4. * debian/rules: Also run make docs inside doc/manual/ * debian/control: Added Build-Depends: for manual creation * debian/jags.doc: Install the three pdf manuals -- Dirk Eddelbuettel <e...@debian.org> Tue, 18 May 2010 14:46:08 -0500 jags (2.1.0-1) unstable; urgency=low * New upstream release -- Dirk Eddelbuettel <e...@debian.org> Wed, 12 May 2010 11:11:24 -0500 Some of my Ubuntu systems get a deb-src http://http.us.debian.org/debian/ unstable main non-free contrib in /etc/apt/sources.list which is _harmless_ : as it points to sources, it will never install binaries that could break. But you _can_ get access to sources before the corresponding packages come to you via bi-annual Ubuntu updates. As discussed here -- so then apt-get update apt-get source -b jags would build jags. (I do the build in a chroot but it is otherwise the same). | don't think it is updated yet for Ubuntu. | | In case it saves you some trouble, I've uploaded the package and the | Debian build stuff here: | | http://pj.freefaculty.org/Ubuntu/10.04/amd64/jags/ | | And the package itself is here: | | http://pj.freefaculty.org/Ubuntu/10.04/amd64/jags/jags_2.1.0-1_amd64.deb | | My package signing key is here, in case you are security conscious. | | http://pj.freefaculty.org/Ubuntu | | I am sorry this is not apt-get able. I'm not in that frame of mind. | I'm really more of an RPM packager than a DEB builder. | | After installing that, there is joy and happiness in rjags land, as | you see here. | | > install.packages("rjags",dep=T) | Warning in install.packages("rjags", dep = T) : | argument 'lib' is missing: using | '/home/pauljohn/R/x86_64-pc-linux-gnu-library/2.11' | --- Please select a CRAN mirror for use in this session --- | Loading Tcl/Tk interface ... done | trying URL 'http://cran.wustl.edu/src/contrib/rjags_2.1.0-4.tar.gz' | Content type 'application/x-tar' length 57357 bytes (56 Kb) | opened URL | ================================================== | downloaded 56 Kb | | * installing *source* package ‘rjags’ ... | checking for prefix by checking for jags... /usr/bin/jags | checking for g++... g++ | checking for C++ compiler default output file name... a.out | checking whether the C++ compiler works... yes | checking whether we are cross compiling... no | checking for suffix of executables... | checking for suffix of object files... o | checking whether we are using the GNU C++ compiler... yes | checking whether g++ accepts -g... yes | checking how to run the C++ preprocessor... g++ -E | checking for grep that handles long lines and -e... /bin/grep | checking for egrep... /bin/grep -E | checking for ANSI C header files... yes | checking for sys/types.h... yes | checking for sys/stat.h... yes | checking for stdlib.h... yes | checking for string.h... yes | checking for memory.h... yes | checking for strings.h... yes | checking for inttypes.h... yes | checking for stdint.h... yes | checking for unistd.h... yes | checking Console.h usability... yes | checking Console.h presence... yes | checking for Console.h... yes | checking for gcc... gcc | checking whether we are using the GNU C compiler... yes | checking whether gcc accepts -g... yes | checking for gcc option to accept ISO C89... none needed | checking for jags_version in -ljags... yes | configure: creating ./config.status | config.status: creating src/Makevars | configure: creating ./config.status | config.status: creating src/Makevars | config.status: creating R/unix/zzz.R | ** libs | g++ -I/usr/share/R/include -I/usr/include/JAGS -fpic -g -O2 -c | jags.cc -o jags.o | g++ -shared -o rjags.so jags.o -L/usr/lib -ljags -L/usr/lib64/R/lib -lR | installing to /home/pauljohn/R/x86_64-pc-linux-gnu-library/2.11/rjags/libs | ** R | ** preparing package for lazy loading | Loading required package: lattice | ** help | *** installing help indices | ** building package indices ... | ** testing if installed package can be loaded | module basemod loaded | module bugs loaded | | * DONE (rjags) | | The downloaded packages are in | ‘/tmp/Rtmp1WTF1H/downloaded_packages’ | > Yup. -- Regards, Dirk _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian