Hi,
After loading R 4.0.0 on Ubuntu 20.04.
R version 4.0.0 (2020-04-24) -- "Arbor Day"
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Platform: x86_64-pc-linux-gnu (64-bit)
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and with the following session information:
> sessionInfo()
R version 4.0.0 (2020-04-24)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.0.0
I try to install package `mclust`. R gets stuck when preparing for
lazy loading:
> install.packages('mclust')
Installing package into /home/marc/R/x86_64-pc-linux-gnu-library/4.0
(as lib is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/mclust_5.4.6.tar.gz'
Content type 'application/x-gzip' length 2877519 bytes (2.7 MB)
==================================================
downloaded 2.7 MB
* installing *source* package mclust ...
** package mclust successfully unpacked and MD5 sums checked
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls -fpic -g -O2
-fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=.
-fstack-protector-strong -c
dmvnorm.f -o dmvnorm.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=.
-fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c
-o init.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2
-fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=.
-fstack-protector-strong -c
mclust.f -o mclust.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2
-fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=.
-fstack-protector-strong -c
mclustaddson.f -o mclustaddson.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
-Wl,-z,relro -o
mclust.so dmvnorm.o init.o mclust.o mclustaddson.o -llapack -lblas
-lgfortran -lm
-lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to
/home/marc/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-mclust/00new/mclust/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
I have wait for all night, but the installation is still stuck at the
same point. Does
anybody know how to solve this?
I have installed different packages with no problems. Here a complete
list of packages
already installed at my library directory:
marc@hera:~/R/x86_64-pc-linux-gnu-library/4.0$ ls
askpass DEoptimR generics later pkgbuild
readxl tibble
assertthat desc ggplot2 lazyeval pkgconfig
rematch tictoc
backports deSolve glue lifecycle pkgload
remotes tidyr
base64enc digest gridExtra lspline plotly
reprex tidyselect
BH diptest gtable lubridate plyr
reshape2 tidyverse
blob dplyr gtools magrittr praise
rlang tinytex
broom egg haven markdown prettyunits
rmarkdown utf8
callr ellipsis hexbin mime processx
robustbase uuid
cellranger evaluate highr modelr progress
rprojroot vctrs
cli fansi hms modeltools promises rstudioapi
viridisLite
clipr farver htmltools mstate ps
rvest webshot
coda.base flexmix htmlwidgets muhaz purrr
scales whisker
colorspace flexsurv httr munsell qpdf
selectr withr
crayon flextable isoband mvtnorm quadprog
spatial xfun
crosstalk forcats jsonlite nlme R6
stringi xml2
curl foreign kableExtra officer RColorBrewer
stringr yaml
data.table fs kernlab openssl Rcpp
sys zip
DBI gdata knitr pdftools RcppArmadillo systemfonts
dbplyr gdtools labeling pillar readr testthat
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