On Apr 21, 2009, at 10:48 , James W. MacDonald wrote:
And downloading the tarball and installing is a recipe for failure.
Why? People that don't have direct internet connection do that on a
regular basis. You only have to make sure you don't unpack the content
involuntarily.
If you want to install source packages, just use the correct
arguments.
biocLite("affy", type = "source")
will get you the correct affy version plus all required dependencies.
I don't think Massimo was talking about source packages. That would
require much more - you'll need Xcode tools etc. and you wouldn't see
the error he was having since you'd be compiling it yourself. Note
that on Mac binary packages are also tar balls and R knows what to do
with them ...
Cheers,
Simon
PS: Normally you don't need development tools for binary packages - as
I was pointing out there is something wrong with the binary Massimo
was using.
Kjell Konis wrote:
It looks like you don't have all the development tools installed.
The missing library /usr/local/lib/libgfortran.2.dylib is part of
the Fortran compiler which is included with the full R installer.
Kjell
On 21 avr. 09, at 15:10, Massimo Pinto wrote:
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/Library/Frameworks/R.framework/Resources/library/preprocessCore/
libs/i386/preprocessCore.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/
preprocessCore/libs/i386/preprocessCore.so,
6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
Referenced from:
/Library/Frameworks/R.framework/Resources/library/preprocessCore/
libs/i386/preprocessCore.so
Reason: image not found
Error: package/namespace load failed for 'affy'
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--
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826
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