Hi Michal,
On Tue, Jul 29, 2014 at 4:09 PM, Michał Nowotka <mmm...@gmail.com> wrote:
> Hi,
>
> I wanted to recompile my local rdkit instance to enable Inchi support.
> Unfortunately I got these errors:
>
> ../../lib/libSmilesParse.so.1.2012.09.1: undefined reference to
> `yysmarts_debug'
> ../../lib/libSmilesParse.so.1.2012.09.1: undefined reference to
> `yysmiles_lex_destroy(void*)'
> ../../lib/libSmilesParse.so.1.2012.09.1: undefined reference to
> `yysmarts_lex_init(void**)'
> ../../lib/libSmilesParse.so.1.2012.09.1: undefined reference to
> `yysmiles_debug'
> ../../lib/libSmilesParse.so.1.2012.09.1: undefined reference to
> `yysmarts_lex_destroy(void*)'
>
> Now, when I switched off Inchi support I still have the same error...
> As yo can see, RDkit version I'm using is not the latest but it was
> working before, without any problems and I can't change it now.
>
> Have you experienced similar problem?
>
These kind of errors used to happen in older versions of the RDKit when
there were problems with flex and/or bison/yacc.
You might want to start by rerunning cmake from scratch (in a new build
directory) and then rebuilding.
You should also check the versions of flex and bison that are being used to
make sure that they are ok
-greg
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