Github user mengxr commented on a diff in the pull request:

    https://github.com/apache/spark/pull/3833#discussion_r23823739
  
    --- Diff: 
mllib/src/main/scala/org/apache/spark/mllib/regression/GeneralizedLinearAlgorithm.scala
 ---
    @@ -228,7 +274,34 @@ abstract class GeneralizedLinearAlgorithm[M <: 
GeneralizedLinearModel]
          * is the coefficient in the original space, and v_i is the variance 
of the column i.
          */
         if (useFeatureScaling) {
    -      weights = scaler.transform(weights)
    +      if (numOfLinearPredictor == 1) {
    +        weights = scaler.transform(weights)
    +      } else {
    +        /**
    +         * For `numOfLinearPredictor > 1`, we have to transform the 
weights back to the original
    +         * scale for each set of linear predictor. Note that the 
intercepts have to be explicitly
    +         * excluded when `addIntercept == true` since the intercepts are 
part of weights now.
    +         */
    +        var i = 0
    +        val weightsArray = weights.toArray
    +        while (i < numOfLinearPredictor) {
    +          val start = i * (weights.size / numOfLinearPredictor)
    --- End diff --
    
    put `val n = weights.size / numLinearPredictors` outside `while`


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