All tests pass on 64-bit RHEL (Opteron), and no more segfaults at exit either.
Kiran mabshoff wrote: > Hello folks > > here we go with 3.0.alpha5. So, that happened to 3.0.alpha4? It was > never announced in public since it was a snapshot I initially > considered > potentially unstable, but that didn't happen. We have closed a total > of *221* tickets so far. This alpha should build and doctest without > any significant problems [famous last words]. All the mysterious > segfaults at exit should be fixed. Besides numerous fixes to padics > and > the notebook there were also a boat load of other fixes. The most > visible change to users should be the gcc 4.3 support out of the box. > This release has been build tested on x86-64 Arch Linux. The only > thing > needed is to use the system's Fortran compiler by setting > SAGE_FORTRAN > and SAGE_FORTRAN_LIB - see the README.txt. The list of blockers has > gotten much shorter and we should start winding things down for the > final 3.0 release. On the list of goals we still need 64 bit OSX > support > which is doable and the merge of the benchmarking code. Stay tuned > for the next alpha coming soon ;) > > Sources and binaries are in the usual place: > > http://sage.math.washington.edu/home/mabshoff/release-cycles-3.0/sage-3.0.alpha5.tar > > http://sage.math.washington.edu/home/mabshoff/release-cycles-3.0/sage-3.0.alpha5-sage.math-only-x86_64-Linux.tar.gz > > Cheers, > > Michael > > > List of blockers: > * #2303: bessel_I(1,1,"scipy") segfaults with gcc 4.2.3 on Linux x86 > [nobody has been able to reproduce this so far. gcc 4.2.3 > on x86-64 does not have this problem] > * #2344: python -- upgrade to version 2.5.2 [the spkg works fine, > but causes a segfault in integer.pyx on OSX. Getting this > spkg is essential for the 64 bit OSX port] > * #2592: NTL abort in Integers(125)[] > * #2877: security risk -- several constructors use eval to parse > input > > Memory leaks: > * _fast_eval > * PolyBoRi > * latin squares > > Merged in alpha5: > > #449: Michael Abshoff: lcalc Solaris build fixes > #848: Alex Ghitza: Using strings for infinity in GSL > #1626: Michael Abshoff: update lcalc to 20080205, add gcc 4.3 support > #1763: Alex Ghitza, Didier Deshommes: implement norms for matrices > #1766: Dan Drake, Harald Schilly, Mike Hansen: enhancing latex > embedding with plots > #2195: Willem Jan Palenstijn: odd Givaro-related crash in finite > fields > #2219: Alex Ghitza: docs for root_field should say the polynomial > needs > to be irreducible > #2347: Robert Bradshaw: better parsing for symbolics > #2616: Didier Deshommes: Replace all matrix.submatrix() instances > #2704: Martin Albrecht: bug in lcm(a,b) for a,b polynomials in QQ[] > if a is constant > #2850: Chris Swierczewski: Docstrings and doctests for permgroup.py > #2851: William Stein: clean binary install of sage followed by > "sage -br" is broken > #2857: Didier Deshommes: numerical_approx for matrices > #2875: William Stein: notebook -- save_session is completely broken > in the notebook > #2879: John Voight: Bug fix in totallyreal_rel > #2880: John Cremona: Special code for elliptic curve cardinality for > j=0 and j=1728 > #2901: William Stein: rewrite load_session and save_session to use > much better modern techniques (in particular merge the > notebook > and non-notebook implementations) > #2904: Didier Deshommes: sage/matrix/matrix_misc.py has no copyright > info > #2905: Gary Furnish: Various speedups > #2911: Michael Abshoff: Use "$@" instead of "$*" in sage-* local/bin > #2912: Martin Albrecht: M4RI should be built with -O3 > #2913: William Stein: notebook -- deleting a running cell results in > a bug > #2914: William Stein: integers are immutable but set_str breaks that; > having this function is a *major* bug. > #2915: Mike Hansen, William Stein: bug in symbolic integration or > "stupid bug in the sage/maxima interface"? > #2916: Willem Jan Palenstijn: invalid coercion between non-prime > finite > fields > #2917: William Stein: internal server error in notebook > sage-3.0.alpha4 > #2919: Michael Abshoff: gcc 4.3: compilation issues in partitions_c.cc > #2920: Michael Abshoff: gcc 4.3: fix rubiks.spkg build > #2921: Michael Abshoff: gcc 4.3: Fix flintqs.spkg build > #2923: Michael Abshoff: gcc 4.3: matplotlib build fix > #2924: William Stein: programming guide section on style is terrible! > #2925: Michael Abshoff: gcc 4.3: givaro-3.2.10.rc3 is broken > #2927: Michael Abshoff: gcc 4.3: make Singular.spkg compile > #2929: Michael Abshoff: gcc 4.3: fix gmp.spkg > #2931: Michael Abshoff: gcc 4.3: fix linbox.spkg compilation > > Merged in alpha4: > > #1689: William Stein, Michael Abshoff: document SAGE_FORTRAN_LIB > #1948: John Cremona, Alex Ghitza: K.factor_integer needs a name > change, > since now it does much more > #2199: Tim Abbott, Michael Abshoff: Copyright files for Debian > packages > #2394: Tom Boothby: Wrap Cremona's newforms class > #2590: Jason Grout: plotting a line with no points throws a > nonsensical error > #2643: Tim Abbott, Michael Abshoff: Fix Debian Sections > #2682: Robert Bradshaw: balanced product for generators/iterators > #2780: Alex Ghitza: factorisation over number field has wrong unit > part > #2814: Carl Witty: sage-3.0-alpha1 on ppc -- new randstate code > doesn't work right at all > #2822: Michael Abshoff, Michael Brickenstein, Alexander Dreyer: fix > Invalid read in libgroebner.so, fix memleak in BoolPolyRing > destructor > #2833: Clement Pernet: Linbox build failure on OSX 10.4 intel > #2843: Willem Jan Palenstijn, David Roe: p-adic extension segfault > #2864: Dan Bump, Mike Hansen: Weyl groups are mplemented in > rootsystem.py > #2865: Michael Abshoff: PolyBori fails to build on OSX 10.4 intel > #2866: Yi Qiang: DSage - use tempfile.NamedTemporaryFile for unit > tests > #2867: Yi Qiang: DSage - allow load_files parameter in __call__ > #2868: Dan Bump, Mike Hansen: Weight revision for fastcrystals > #2869: Tom Boothby: Cell sizing is broken > #2870: Gary Furnish: Various files poorly import calculus.py > #2871: Didier Deshommes: matrix: M[range(2,-1,-1),:] returns junk > #2874: Dan Bump: add tests for type E root system, correct some > misinformation in root_system.py, add Justin Walker credit > #2876: Yi Qiang: sage/server/notebook/twist.py doctest fails when > dsage certificates are not present > #2878: William Stein: notebook -- cython .c and .html links should > open in new links (use target="_new") > #2882: Tom Boothby: resize cells on window resize > #2883: Tom Boothby: notebook -- typing in safari is sluggish! > #2885: William Stein: make a knoboo optional package > #2887: Tom Boothby: notebook -- greatly optimize something in the > notebook by implementing a cached version of get_element > #2888: Didier Deshommes: matrix slicing fails in degenerate cases > #2889: William Stein: notebook -- huge output cells crash firefox > #2890: William Stein: html.py --fix up documentation a little and > a small bug > #2892: William Stein: notebook -- traceback shrinking/expanding > in the notebook is broken in an obscure case > #2893: William Stein: notebook -- make it explicitly clear which > systems are optional > #2897: David Joyner: GAP: replace guava 3.4 by new and improved > guava 3.4 > > Merged in alpha3: > > #1761: Tom Boothby, Nick Alexander: Graphviz output for graphs > #2242: Jason Grout: optional nauty package > #2379: Gary Furnish, Michael Abshoff: Merge sage-ptest into > sage-test > #2748: Dan Drake: Permutation constructor does not accept lists > of tuples > #2802: Josh Kantor: Sage 3.0.alpha1: sage/misc/inline_fortran.py > doctest failure > #2820: William Stein: notebook -- turn off the jsmath warning; > fix other misc polish issues and bugs resulting from #2840 > #2826: William Stein: notebook -- in safari, pressing enter after > showing the list of completions doesn't work. You have to > click > #2834: Martin Albrecht: PyLint import cleanup for > sage.rings.polynomial > #2835: Nick Alexander: primes_of_degree_one iterator for > NumberField_generic > #2839: Mike Hansen: bug in conversion from symmetrica's longint > #2840: William Stein: notebook -- remove ALL unused javascript > from js.py and DOCUMENT every single function > #2842: Martin Albrecht: PyLint - unused variable cleanup for > sage.rings.polynomial > #2844: Marshall Hampton: Polyhedral improvements, round 2 > #2845: Martin Albrecht: fix PolyBoRi assertion errror > #2846: Robert Bradshaw: no need for bitset.h with new Cython > #2847: Robert Bradshaw: more speedups to cyclotomic polynomials > #2848: Michael Abshoff: numerical noise in sage/misc/prandom.py > on MacIntel OSX 10.5 > #2849: John Cremona, Alex Ghitza: Bug in elliptic curve > cardinality for j=0 in char. 3 > #2852: Tom Boothby: ctrl-enter broken in firefox/linux > #2853: Dan Bump: A correction to the weight of crystal > elements for type A and a speedup for all types > #2856: Martin Albrecht: PyLint unused variable cleanup for > sage.rings.polynomial - Part 2 > #2859: Jason Grout: arrow3d((0,0,0), (0,0,-1)) plots an *upward* > pointing arrow > #2862: Michael Abshoff: Sage 3.0.alpha2: fix tex problems > #2863: Dan Drake: Integer() does not specify that numbers > beginning with 0 and 0x are treated specially > > Merged in alpha2: > > #358: John Cremona: padic_height_pairing_matrix computes too > many heights > #530: Martin Albrecht: leak in Matrix_integer_dense__solve_iml > exposed by matrix/strassen.pyx > #2316: Yi Qiang: dsage.start_all() can leave zombie workers > around > #2346: Robert Bradshaw: Sage needs a simple api for interaction > with other applications > #2497: David Harvey: crash in polynomial remainder > #2680: Craig Citro: Modular forms for Gamma1(N) have wrong Sturm > bound > #2743: Jason Grout: make symbolic equalities and inequalities > callable > #2745: Yi Qiang: upgrade twisted to 8.0.1 > #2772: Martin Albrecht: Update Singular to 3-0-4-2 > #2775: Martin Albrecht: multivariate factoring over some rings > gives incorrect results [this is a limitation of Factory, > so instead of returning an incorrect result throw an > exception] > #2799: Didier Deshommes: matrix's __getitem__ doesn't respect > slice object's step attribute > #2804: Clement Pernet: fix ssmod.py failure [linbox related] > #2805: Emily Kirkman: Add maximal parameter to Graph genus > computation > #2806: Michael Abshoff: Sage 3.0.a2: numerical noise in > sage/misc/prandom.py doctest > #2807: David Harvey: line 26 of c_lib/src/interrupt.c is wrong > #2808: Daniel Bump: G2 fundamental weights were the negative of > what they should be > #2810: John Cremona: Use new generic code in > elliptic_curve_finite_field > #2811: Michael Abshoff: make check is broken due to #2746 > #2812: Timothy Clemans: increase notebook.py doctests coverage > #2813: Tom Boothby, William Stein: Add keycodes to split / join > cells > #2815: David Joyner: add more coding theory to the reference > manua > #2818: William Stein: notebook: document most functions in js.py > #2819: Jason Grout: edge_style option for directed graphs > #2823: William Stein: notebook -- safari 3.1 introspection > completely broken > #2824: Craig Citro: sturm_bound incorrect for GammaH > #2825: William Stein: notebook -- document js.py some more > #2828: Mike Hansen, Martin Albrecht: get doctest coverage for > combinat/ to 100% > #2829: Martin Albrecht: PyLint cleanup of crypto.mq.sr > #2830: Nathan Dunfield: ace-5.0.spkg fails to install > #2831: William Stein: speed up plotting when using floor() > #2832: Geert Heldager Nielsen, William Stein: fix mistake in > tutorial > #2836: Yi Qiang: twisted.conch.ssh deprecated functions > #2837: Yi Qiang: use twisted-8.0.1's blockingCallFromThread > #2838: Gary Furnish: _PyList_Extend missing > > Merged in alpha1: > > #210: John Cremona: discrete log and other generic functions > #778: John Cremona: Finite Field __call__ doesn't accept > polynomials over F_p > #1138: Steffan Reidt, Robert Bradshaw: add implementation of > Tonelli-Shanks to sage > #2232: Michael Kallweit: Bug in 'digits' function for Integers > #2525: Clement Pernet: update Linbox to 1.1.5 final upstream > release > #2526: Michael Abshoff: switch charpoly mod p back to linbox as > default > #2544: William Stein, Craig Citro, Robert Bradshaw: modabvar, > i.e. rewrite of modular abelian varieties > #2654: Robert Bradshaw: Cyclotomic polynomials speed > #2655: Gary Furnish: Robert Bradshaw: Cython circular cdef > imports, update to Cython 0.9.6.13.rc1 > #2659: John Cremona: Elliptic curve cardinality sometimes Rational > with bad consequences for efficiency > #2670: Didier Deshommes: implement a matrix.find() command > #2713: Carl Witty: sage-doctest applies backslash handling to > expected outputs > #2746: Tim Abbott, Michael Abshoff: Support for writing test > related files in SAGE_TESTDIR > #2751: Martin Albrecht: multivariate polynomials is_homogeneous > #2753: Carl Witty: new "randstate" framework for a global Sage > random number seed > #2764: Minh Nguyen, Mike Hansen: fix typos in documentation > #2765: Robert Miller: bug in graph_isom, Hoffman-Singleton > constructor > #2766: Jason Grout, Michael Abshoff: graph adjacency matrix > defaults to sparse > #2767: Carig Citro: error in elem.matrix(F) and elem.norm(F) > for F == elem.parent() a number field > #2771: Martin Albrecht: PolyBoRi doctest coverage at 54% > #2774: Martin Albrecht: conversion from PolyBoRi to Singular > #2776: Martin Albrecht: simplify BooleanPolynomialRing > constructor for enduser > #2784: Chris Swierczewski: Doctests for rings/complex_number.pyx > #2786: David Harvey: update zn_poly to 0.8 > #2788: David Harvey: update hypellfrob to 2.1 > #2790: Michael Abshoff: fix very annoying output of new parallel > doctesting > #2791: Tim Abbott: Build symmetrica with -fPIC on Debian > #2792: Martin Albrecht: remove workaround for non-existing > Cython bug > #2793: William Stein: Bug in the sage preparser! "\"Yes,\" he > said." > #2794: Martin Albrecht: PolyBoRi to Magma conversion > #2795: Martin Albrecht: add QuotientRing -> Magma conversion > #2797: David Harvey: fix memleaks in zn_poly > #2798: Gary Furnish: probably easy-to-fix ptest issue > > Merged in alpha0: > > #1452: Robert Miller: Guava - in gap-4.4.10, Leon's code is > never compiled > #1863: Martin Albrecht: implement f.change_ring(R) for f a > multivariate polynomial > #2060: Martin Albrecht, Burin Erocal: Update PolyBoRi interface > and spkg to 0.3.1 > #2200: Tim Abbott: copyright documentation for various spkgs > #2477: Robert Miller, Jason Grout: 3d plotting of graphs -- need > to force aspect_ratio=[1,1,1] by default > #2620: Martin Albrecht: generator generator support for ideal > #2641: David Joyner: GAP: replace guava 3.1 by guava 3.3 > #2651: Jason Grout, Ryan Hinton, Martin Albrecht: rewrite > matrix() constructor > #2667: Ryan Hinton, Carl Witty, Mike Hansen, Robert Bradshaw: > transform.pyx calls matrix() with an RDF vector inside > of a list instead of a flat list. > #2698: John Cremona, Alex Ghitza: Small improvements to integer > lcm, gcd on lists and a new xlcm function > #2726: Tim Abbott: SAGE debian build system update > #2729: Robert Bradshaw: tiny jmol spheres have holes > #2735: Tim Abbott: minor eclib build system improvements > #2738: Martin Albrecht: LaTeX description environment in docstrings > #2742: Jason Bandlow, Dan Bump, Mike Hansen, Anne Schilling, Nicolas > Thiery, Justin Walker: add crystals to the main branch of Sage > #2747: Tim Abbott: fix SAGE doctest import errors due to introdution > of $SAGE_TESTDIR > #2752: Michael Kallweit: Speedup for all_paths() > #2756: Tim Abbott: Debianize GAP spkg > #2757: Tim Abbott: Debianize scipy_sandbox package > #2758: Tim Abbott: iml and linbox updates for Debian gfortran > transition > #2759: Tim Abbott: SAGE debian/ directory update > #2760: Tim Abbott: Debian amd64 fixes for NTL > #2761: Tim Abbott: Debian amd64 fixes for tachyon > #2762: Tim Abbott: Debian amd64 fixes for FLINT > #2763: Tim Abbott: Debian amd64 fixes for rubiks --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
