i2b2 AUG-SHRINE Annual Meeting - who's going?

[Dan Connolly]

I'm on the fence about going... wondering how many of you I'd see there if I 
went.



i2b2 AUG-SHRINE Annual Meeting

Tuesday, June 23, 2015

Joseph P. Martin Conference Center

Harvard Medical Center

77 Avenue Louis Pasteur

Boston, MA  02115


(ref: i2b2 AUG)

--
Dan

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Re: [gpc-informatics] #158: usable view of LOINC lab terms

[GPC Informatics]

#158: usable view of LOINC lab terms
-+
 Reporter:  rwaitman |   Owner:  Aaron.Meyer
 Type:  enhancement  |  Status:  assigned
 Priority:  major|   Milestone:  data-domains3
Component:  data-stds|  Resolution:
 Keywords:   |  Blocked By:
 Blocking:  241, 285 |
-+

Comment (by nateapathy):

 Here's the updated document to include codes in the term paths. The csv
 file is posted on Central Desktop in the CMH folder
 [https://pcornet.centraldesktop.com/c4gpc/file/40238135/ here].

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Re: [gpc-informatics] #263: Adaptable cohort query design and administration

[GPC Informatics]

#263: Adaptable cohort query design and administration
--+
 Reporter:  nateapathy|   Owner:  rwaitman
 Type:  design-issue  |  Status:  new
 Priority:  minor |   Milestone:  adaptable-accrual
Component:  data-stds |  Resolution:
 Keywords:|  Blocked By:  276
 Blocking:|
--+

Comment (by ngraham):

 In discussion with Russ, I learned that pregnancy is one of the exclusion
 criteria for the aspirin trial.  KU has it under `Visit Details \ Visit
 Vitals \ Last Menstrual Period \ Pregnant` in HERON/i2b2.  There are also
 other pregnancy related concepts such as diagnoses.

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UMLS stuff - google hangout

[Dan Connolly]

Angela was trying without luck to get connected to gotomeeting, but we think 
we've met the tech challenge via google hangouts. You're welcome to join
https://plus.google.com/hangouts/_/gyuqs2x76cscib7gpyumqy5ycua
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Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

[GPC Informatics]

#252: collect test results of Weight and Height cohort selection queries from 
all
sites
+-
 Reporter:  bokov   |   Owner:  gbushee
 Type:  task|  Status:  assigned
 Priority:  major   |   Milestone:  obesity-survey-def
Component:  data-sharing|  Resolution:
 Keywords:  obesity-cohort  |  Blocked By:  210, 250, 251
 Blocking:  254 |
+-
Description changed by dconnolly:

Old description:

> Dry-run of query and report back 24 counts: number of patients in each
> combination of age-bin (2-5, 6-11, 12-17, 18-20); sex; BMI status
> (healthy, overweight, obese) (each site, with modified instructions for
> counts from UMNC and SouthWestern
>
> ''Dan, reporting based on discussion with Alex''

New description:

 Dry-run of query and report back counts; see #250, #251 for details

 ''Dan, reporting based on discussion with Alex''

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Re: [gpc-informatics] #232: Q1 2015 QA exercise

[GPC Informatics]

#232: Q1 2015 QA exercise
--+-
 Reporter:  mish  |   Owner:  mish
 Type:  task  |  Status:  closed
 Priority:  major |   Milestone:  data-quality3
Component:  data-quality  |  Resolution:  fixed
 Keywords:  data-quality  |  Blocked By:  159, 238, 262, 270
 Blocking:|
--+-
Changes (by dconnolly):

 * cc: campbell, dconnolly, nateapathy, aaron.meyer@…, badagarla, bzschoche
 (removed)
 * cc: gpc-dev@… (added)
 * status:  assigned => closed
 * resolution:   => fixed


Comment:

 Somehow I was under the impression that we owed a write-up on [[PMO]]
 milestone 2.6, but we already did that in #176. So the write-up is for our
 own purposes.

 I took a quick peek, and I see nothing wrong with your draft. Let's start
 looking at what to do for next quarter, perhaps focussing on CDM
 compliance (#240).

 As "reporter," it's nominally up to you to judge whether this ticket is
 done (subject to appeal), but I'm going to optimistically presume you're
 happy with it.

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Re: [gpc-informatics] #252: collect test results of Weight and Height cohort selection queries from all sites

[GPC Informatics]

#252: collect test results of Weight and Height cohort selection queries from 
all
sites
+-
 Reporter:  bokov   |   Owner:  gbushee
 Type:  task|  Status:  assigned
 Priority:  major   |   Milestone:  obesity-survey-def
Component:  data-sharing|  Resolution:
 Keywords:  obesity-cohort  |  Blocked By:  210, 250, 251
 Blocking:  254 |
+-
Changes (by dconnolly):

 * owner:  dconnolly => gbushee


Comment:

 How is MCW doing on this?

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Re: [gpc-informatics] #103: subject of observation (e.g. maternal findings relevant to child)

[Bushee, Glenn]

Would MOM_ID / DAD_ID maybe be better in PATIENT_DIMENSION as a 1-time fact 
like BIRTH_DATE/VITAL_STATUS?  This shouldn’t overload that table with extra 
data and would facilitate making queries (not pretty ones) joining together 
Mom/Child facts from OBSERVATION_FACT.

BTW, I checked our instance and was surprised to find that the MOM_ID field was 
filled in over 10k times, but the DAD_ID was almost non-existent.

- Glenn

   Medical Informatics Senior Analyst
   CTSI – Clinical & Translational Science Institute
   gbus...@mcw.edu
   (414) 805-7239

From: , James R mailto:campb...@unmc.edu>>
Date: Monday, May 11, 2015 at 7:14 PM
To: Phillip Reeder 
mailto:phillip.ree...@utsouthwestern.edu>>
Cc: "gpc-dev@listserv.kumc.edu" 
mailto:gpc-dev@listserv.kumc.edu>>
Subject: Re: [gpc-informatics] #103: subject of observation (e.g. maternal 
findings relevant to child)

Agreed; that was the point of the LOINC codes for observation_values for 
"Mother_of", "Father_of"  and "Family_member_of"
Jim

James R. Campbell MD
campb...@unmc.edu
Office: 402-559-7505
Secretary: 402-559-7299
Pager: 402-888-1230

On May 7, 2015, at 11:13 AM, "Phillip Reeder" 
mailto:phillip.ree...@utsouthwestern.edu>> 
wrote:

The best way I can think of would be to add a concept that links to a
parent or child patient_num.

For example, if a child had an observation of:
CHILD_OF   VALUE= where  is the patient_num of the mother.

Or we could do the opposite with the mother¹s observation being:
HAS_CHILD  VALUE= where  is the patient_num of the child.

This would give you the ability, on the back end at least, to find
siblings and parents.

Alternate plan would be to just add a separate table with the data needed
and keep it outside of i2b2, since i2b2 can¹t really handle the parent
child relationships.

Phillip


On 5/7/15, 9:18 AM, "GPC Informatics" 
mailto:d...@madmode.com>> wrote:

#103: subject of observation (e.g. maternal findings relevant to child)
--+---
Reporter:  campbell  |   Owner:  preeder
Type:  design-issue  |  Status:  assigned
Priority:  major |   Milestone:  bariatric-study-data
Component:  data-stds |  Resolution:
Keywords:|  Blocked By:
Blocking:|
--+---
Changes (by dconnolly):

* owner:  westr006 => preeder
* status:  reopened => assigned


Comment:

Phillip, how would you approach this?

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The future of medicine, today.





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