Re: [basedb-devel] Writing an external importer/exporter

2007-09-03 Thread Carl Mäsak
Carl (>), Carl (>>), Nicklas (>>>): > > > If you want webservices you will have to do most of the work yourself. > > > We have been experimenting with this and there is a prototype branch and > > > a perl library for using it: > > > http://lev.thep.lu.se/trac/baseplugins/wiki/se.lu.thep.webservices

Re: [basedb-devel] Writing an external importer/exporter

2007-09-03 Thread Carl Mäsak
Jari (>): > I checked the test.pl from the repository and it works (revision 415, > new version where port 8080 is removed). Can you please try the client > once more and report back. Now works, thanks. Disregard my last mail from four hours ago -- our mails went past each other on the sf mail se

Re: [basedb-devel] Writing an external importer/exporter

2007-09-03 Thread Jari Häkkinen
Hi, I checked the test.pl from the repository and it works (revision 415, new version where port 8080 is removed). Can you please try the client once more and report back. Cheers, Jari Carl Mäsak wrote: > Carl (>), Nicklas (>>): >>> If you want webservices you will have to do most of the wo

Re: [basedb-devel] How to extend and overrideBioAssaySetExporterandBase1PluginExecuter?

2007-09-03 Thread vegard nygaard
Hi. I have now modified my BASE2.4 code to the "Abstract" version, laid out earlier by Nicklas. I got it to work and it will do very well for my needs, that is if I understood what the plan really was. It would be nice if Lund put it into the next version. But verify that this was what you meant an

[basedb-devel] Run script in plugin

2007-09-03 Thread Peter Mertens
Dear list, is it possible to run a script from within the plugin? Then i have something like this in the "run" method: public void run(...) { ... Runtime runtime = Runtime.getRuntime(); Process process = runtime.exec("./scirpt PluginRunner arg1 arg2"); int exitValue = process

Re: [basedb-devel] How to extend and overrideBioAssaySetExporterand Base1PluginExecuter?

2007-09-03 Thread Nicklas Nordborg
Gregory Vincic wrote: > Hi, > > consider the possibility where future plugins would like to use code from both > of the suggested Abstract classes > > - AbstractPluginExecuter > - AbstractBioAssaySetExporter > > as you can only extend on of the abstract classes the problem remains. This is not

Re: [basedb-devel] Have Raw Bioassay, want raw data file, fileformat and channels.

2007-09-03 Thread Nicklas Nordborg
vegard nygaard wrote: > Hi. I am searching for some information in BASE2 that I often looked at in > BASE1. I can't find it. Can you help me? This is not a migration question. > The BASE2 data is fresh test data. > > I have a Raw bioassay and want to see what raw data file I used to create > it.