e Molecular Biology of RNA
> University of California at Santa Cruz
> Santa Cruz, California 95064
> USA
>
> http://scottlab.ucsc.edu
>
> > On Sep 23, 2017, at 12:11 PM, Barry Finzel wrote:
> >
> > I've been trying to get coot running on my MacBook Pro after
th windows from other software, either -
just coot.
Is this a problem others have observed and/or dealt with?
--Barry Finzel
Someone once told me they believed that azido functional groups (R-N=N=N)
were subject to X-ray photolysis and may not remain intact during
crystallography. I can certainly find MANY examples of azido groups that
appear NOT to be photolyzed in macromolecular structures in the PDB,
beginning with
If you are interested in finding other interactions that look like one
particular one, rather than just classifying things (e.g., "is this
cyan, sea-foam, turquoise or teal?"), then I'd recommend the
substructure searching capabilities of the DrugSite server
You can specify any arbitrary s
Measuring Angles is another matter, but the superposition services of
the DrugSite will align an arbitrary selection of DNA residues (the
moving molecule) onto a target residue selection on another
structure. The selection can include a duplex, or even a duplex and
some protein residues.
Minimally, I believe you want to use P and C1'.
(This has been done by others, including Pabo and Pabo & Nekludova,
J.Mol. Biol., 301:597-694 (2000).
I actually prefer to use all backbone atoms: P O5' C5' C4' O3' C3' C2'
C1' O1'
Barry Fi
