As I understood the problem, it is that automatic assignment comes out
differently for different structures of the same protein or proteins so close
that they should have the same secondary structure, due to differences in
quality of the structures. The question then is not how to determine sec
Dear J. Vitali,
there are tools that have been mentioned by others, that assist with the
assignment. The final decision depends on you as researcher. You should
visually check the hydrogen bonding whether the boundaries are consistent with
the automated assignment.
People often seem to think t
*Sent:* 29 January 2017 10:41
*To:* CCP4BB@JISCMAIL.AC.UK <mailto:CCP4BB@JISCMAIL.AC.UK>
*Subject:* [ccp4bb] secondary structure assignment to PDB file
Hi
Is there any tool that can assign secondary structure to the PDB
file. The problem is if I used different modelling tools,
--
> *From:* CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of chemocev
> marker [jirivit...@gmail.com]
> *Sent:* 29 January 2017 10:41
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Subject:* [ccp4bb] secondary structure assignment to PDB file
>
> Hi
> Is there any t
anuary 2017 10:41
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] secondary structure assignment to PDB file
Hi
Is there any tool that can assign secondary structure to the PDB file. The
problem is if I used different modelling tools, there are regions in the
protein which does not remain consi
Hi
Is there any tool that can assign secondary structure to the PDB file. The
problem is if I used different modelling tools, there are regions in the
protein which does not remain consistent and looks different in different
application.
best
J. Vitali
