Source: python-biom-format Version: 2.1.10-1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > # arch > USE_CYTHON=true dh_auto_build > pybuild --build --test-pytest -i python{version} -p 3.9 > I: pybuild base:232: /usr/bin/python3 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/parse.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/err.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/exception.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > copying biom/tests/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > copying biom/tests/test_util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > copying biom/tests/long_lines.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > copying biom/tests/test_err.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > copying biom/tests/test_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > copying biom/tests/test_parse.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_validator.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_subsetter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_normalizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_ids.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/uc_processor.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_summarizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/metadata_exporter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_head.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/metadata_adder.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/table_converter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > copying biom/cli/installation_informer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_show_install_info.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_table_normalizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_table_converter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_add_metadata.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_subset_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_uc_processor.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_summarize_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_validate_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli > running egg_info > creating biom_format.egg-info > writing biom_format.egg-info/PKG-INFO > writing dependency_links to biom_format.egg-info/dependency_links.txt > writing entry points to biom_format.egg-info/entry_points.txt > writing requirements to biom_format.egg-info/requires.txt > writing top-level names to biom_format.egg-info/top_level.txt > writing manifest file 'biom_format.egg-info/SOURCES.txt' > reading manifest file 'biom_format.egg-info/SOURCES.txt' > reading manifest template 'MANIFEST.in' > warning: no directories found matching 'support_files' > warning: no directories found matching 'tests/test_data' > no previously-included directories found matching 'docs/_build' > warning: no previously-included files matching '*.pyc' found anywhere in > distribution > warning: no previously-included files matching '*.pyo' found anywhere in > distribution > warning: no previously-included files matching '.git' found anywhere in > distribution > warning: no previously-included files matching '*.so' found anywhere in > distribution > warning: no previously-included files matching '.*.swp' found anywhere in > distribution > adding license file 'COPYING.txt' > writing manifest file 'biom_format.egg-info/SOURCES.txt' > copying biom/_filter.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/_subsample.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > copying biom/_transform.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets > copying biom/assets/exercise_api.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets > copying biom/assets/exercise_cli.sh -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables > copying biom/tests/test_data/bad_table.txt -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/bad_table.txt.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/empty.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/no-contents.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.json.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/test.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/test.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data > running build_ext > building 'biom._filter' extension > creating build > creating build/temp.linux-x86_64-3.9 > creating build/temp.linux-x86_64-3.9/biom > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 > -c biom/_filter.c -o build/temp.linux-x86_64-3.9/biom/_filter.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_filter.c:639: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g > -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.9/biom/_filter.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-x86_64-linux-gnu.so > building 'biom._transform' extension > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 > -c biom/_transform.c -o build/temp.linux-x86_64-3.9/biom/_transform.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_transform.c:639: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g > -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.9/biom/_transform.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-x86_64-linux-gnu.so > building 'biom._subsample' extension > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 > -c biom/_subsample.c -o build/temp.linux-x86_64-3.9/biom/_subsample.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_subsample.c:639: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g > -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.9/biom/_subsample.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-x86_64-linux-gnu.so > # indep: > PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html > Running Sphinx v4.2.0 > making output directory... done > > Exception occurred: > File "/<<PKGBUILDDIR>>/doc/conf.py", line 238, in setup > app.add_javascript('copybutton.js') > AttributeError: 'Sphinx' object has no attribute 'add_javascript' > The full traceback has been saved in /tmp/sphinx-err-fvip4rcz.log, if you > want to report the issue to the developers. > Please also report this if it was a user error, so that a better error > message can be provided next time. > A bug report can be filed in the tracker at > <https://github.com/sphinx-doc/sphinx/issues>. Thanks! > make[1]: *** [debian/rules:25: override_dh_auto_build] Error 2 The full build log is available from: http://qa-logs.debian.net/2021/10/23/python-biom-format_2.1.10-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.