You can use the -H flag when copying 'cp -RH' and it will follow the
symlink's target rather than copying the symlink itself.
But either way that symlink exists in the subjects/bert folder and the
existence of those symlinks is inconsequential to the actual running of
qdec or other programs, as
Im fairly certain the mac version of freesurfer never included
mri_decimate. Was the mailing list archive you came across a Mac
specific one?
-Zeke
On 11/18/2016 07:26 PM, Dorothy Sincasto wrote:
> Hi,
>
> I can't find in my freesurfer version the mri_decimate, and I tried to
> download it from
Hello Freesurfer Developers,
I'm willing to use the new released version from Freesurfer (6.7.0) to
measure the hippocampal volumes.
Is that able to provide me the volumes of the anterior (hippocampal head)
and posterior (hippocampal tail) parts of the Hippocampus and segmented
these parts separa
There are two things you can do:
1. You will need to concatenate them together yourself. So something like
mri_concat
*/bold/$analysis.sm8.lh/contrast/lh.cespct.map.lh.fsaverage_sym.nii.gz
--o analysis.sm8.lh.contrast.lh.cespct.map.lh.fsaverage_sym.nii.gz
Then perform the higher level GLM analy
Hi again
The plan is to perform LH v RH comparisons in an fMRI task. To get subject fMRI
data for both LH & RH on to LH fsaverage_sym I followed your previous advice of
reregistering the individual maps (performed on -self surface) using
mri_apply_reg.
I am now trying to perform group analyses
