[Freesurfer] Question on Freesurfer v.7.4.0

2023-05-11 Thread Codrin Mironiuc
External Email - Use Caution Hi, I wanted to install the new freesurfer version v7.4.0, but when I entered the downloads page I realized that it's not showing up on the downloads page as of yet (https://secure-web.cisco.com/1Ik7kyPTfqcfyovpF4HdOSDjavPlUIQiKi3ICy0S1I64cgfUQ7jmauV

[Freesurfer] Question on needing forward field from registration from functional slabs to structural scans

2023-05-11 Thread Codrin Mironiuc
External Email - Use Caution Hi, I am trying to use EasyReg to obtain the forward field from registering a functional slab (partial FOV) to an anatomical (T1-weighted) scan.I know that EasyReg currently does not support functional slabs. So the deformation with our slab looked v

[Freesurfer] Question on EasyReg forward field

2023-03-16 Thread Codrin Mironiuc
External Email - Use Caution Hi, I am trying to shift the statistical maps that I obtained from a second-level fMRI analysis (meaning across multiple sessions for one subject). My plan is to use EasyReg to align the functional data to the structural data. Based on the resulting

[Freesurfer] Question on easy reg

2023-03-16 Thread Codrin Mironiuc
External Email - Use Caution Hi, I have tried to use the EasyReg package to obtain the forward field by registering a functional slab to the structural (with skull) of a subject.This doesn't seem to work, do you know what may be the issue? Many thanks,Codrin _

[Freesurfer] Question on EasyReg package syntax

2023-03-16 Thread Codrin Mironiuc
External Email - Use Caution Hi, I have tried to use EasyReg. I have tried to use the following syntax to generate the output of EasyReg and it didn't seem to work: mri_easyreg --ref structural1.nii.gz --flo structural2.nii.gz --ref_seg segmentation_reference --flo_seg segmentat