Hi Rachel, I have deleted your previous msg and my response, so I don't
know exactly what this is referring to. From the info below, it looks
like you need a backslash ("\") after lh.oribitalfrontal.label. Note
that you should not specify both --cortex and --label
doug
On 7/31/13 7:20 PM, Ra
Hi Doug,
Thanks for the response. Here is my glmfit command:
mri_glmfit \
--y lh.22q_age.thickness.10.mgh \
--fsgd 22q_age.fsgd dods\
--C 22q_age_2.mtx \
--surf fsaverage lh \
--label lh.orbitofrontal.label
--cortex \
--glmdir lh.22q_age_OFC.glmdir
And here is the error message:
gdfReadHeader:
what is your command line? Also, send the terminal output.
On 7/30/13 6:41 PM, Rachel Jonas wrote:
Hi FreeSurfer users,
I am running a GLM analysis on the command line, and would like to
look specifically within an ROI. I added the flag: --label
lh.orbitofrontal.label, in my case, to mri_glm
Hi FreeSurfer users,
I am running a GLM analysis on the command line, and would like to look
specifically within an ROI. I added the flag: --label lh.orbitofrontal.label,
in my case, to mri_glmfit, but keep getting an error. It seems that
whenever it hits this line in the command, it quits. If I p
