Re: [gmx-users] grompp line too long error

2011-11-24 Thread Gianluca Santoni
Here is the detailed info about my setup: System:64-bit Linux GMX version:4.5.4 I know that windows and linux have different line end format and I didn't edit my text files using editor on windows,but all on linux. Which editor? Problems in principle could arise from your encodings setup, even

Re: [gmx-users] grompp line too long error

2011-11-24 Thread 杨伟
Here is the detailed info about my setup: System:64-bit Linux GMX version:4.5.4 I know that windows and linux have different line end format and I didn't edit my text files using editor on windows,but all on linux. My goal is to simulate membrane protein embeded in lipid bilayer,I don't have expe

Re: [gmx-users] grompp line too long error

2011-11-23 Thread Tsjerk Wassenaar
Hi [insert name here], Try putting an empty gurgle.dat in your working directory to see if that is the problem. If it's not, can you provide additional information regarding your system and gromacs installation? Cheers, Tsjerk On Nov 24, 2011 5:50 AM, "杨伟" <20104227...@suda.edu.cn> wrote: I wa

Re: [gmx-users] grompp line too long error

2011-11-23 Thread Mark Abraham
On 24/11/2011 3:45 PM, 杨伟 wrote: I was trying to setup a simulation for membrane in DPPC lipid bilayer following this tutorial: http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/index.html I successfully generated the .gro file for the system.But when I tri

[gmx-users] grompp line too long error

2011-11-23 Thread 杨伟
I was trying to setup a simulation for membrane in DPPC lipid bilayer following this tutorial: http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/index.html I successfully generated the .gro file for the system.But when I tried grompp to generate the .tpr file