You might find the following thread informative. It regards CHARMM
specifically, but Mark's reply to my question was very useful, and is
generally applicable:
http://www.gromacs.org/pipermail/gmx-users/2008-February/032529.html
-Justin
ANINDITA GAYEN wrote:
Hi all,
I have built a topology
Hi all,
I have built a topology file for chaps in OPLS force field with inserted
hydrogen atoms along with bonds, angles, dihedrals etc parameters using the
original topology from prodrg2. The problem is now,
grompp results as,
Generated 342378 of the 342378 non-bonded parameter combinations
G
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