Re: [gmx-users] Lipids forming unsual bonds

Anirban Ghosh wrote: Hi ALL, I am simulating a GPCR protein in a POPC bilayer. I have followed Justins' tutorial to set up the system, but have used POPC instead of DPPC. I have used the same parameters given in that tutorial. Till equilibration everything went well. But after releasing the p

RE: [gmx-users] Lipids forming unsual bonds

What exactly do you mean by "unusual cross bonds"? I suspect what you are seeing is simply a visualisation artifact, with a molecule being displayed across a PBC in the viewer you are using. Catch ya, Dr. Dallas Warren Department of Pharmaceutical Biology and Pharmacology Pharmacy and Pharmaceut