Re: [gpc-informatics] #202: Deploy Data Builder at each GPC site

2015-01-06 Thread GPC Informatics
#202: Deploy Data Builder at each GPC site --+--- Reporter: dconnolly | Owner: preeder Type: task | Status: assigned Priority: major | Milestone: bc-survey-cohort-d

Re: [gpc-informatics] #186: Querying age by numerical constraints

2015-01-06 Thread GPC Informatics
#186: Querying age by numerical constraints -+ Reporter: huhickman| Owner: preeder Type: problem | Status: assigned Priority: major| Mileston

Re: [gpc-informatics] #205: interim builder for breast cancer cohort summary

2015-01-06 Thread GPC Informatics
#205: interim builder for breast cancer cohort summary --+--- Reporter: dconnolly | Owner: huhickman Type: enhancement | Status: assigned Priority: major | Milestone: bc-s

RE: GPC - Phase II LOI count question

2015-01-06 Thread Nathan Graham
Laurel, After discussing with Dr. Waitman today, I plan to use "Number of Active Patient with data in EMR" as the denominator for part B. For "Active Patients", I plan to use the same method we used to characterize enrollment for PCORI milestone 1.1

GPC - Phase II LOI count question

2015-01-06 Thread Verhagen, Laurel A
Just to confirm that numbers are being calculated accurately, what is the appropriate denominator for calculating the Part B: Insurance Coverage Overview? Number of Active Patient with data in EMR? Distinct patient count with at least one encounter or record in the system? Something else? Doesn'

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2015-01-06 Thread GPC Informatics
#90: Diagnoses Modifiers for data attribution --+ Reporter: campbell | Owner: preeder Type: design-issue | Status: assigned Priority: major | Milestone: data-domains2 Component: data-stds | Resolution:

confirmed: tumor registry terms depend on data in HERON NAACCR ETL

2015-01-06 Thread Dan Connolly
Yes, it makes sense that if your tumor registry data doesn't include any 0380 Sequence Number data that you won't see the term in your hierarchy. * tumor_reg_concepts is built from * tumor_reg_codes, from * tumor_item_value, from * NAACR.extract_eav, which is the

RE: Installing DataBuilder

2015-01-06 Thread Dan Connolly
On a good day, installing the oracle driver for python goes like: $ ORACLE_HOME=/opt/oracle/wherever-your-libocci-lives/ pip install cx_Oracle Such good days are sufficiently rare that I'm looking into jython

Re: Installing DataBuilder

2015-01-06 Thread Phillip Reeder
Do you have a mk file with the oracle driver for Python? It looks like the vm install downloads the pg driver. I’m planning to sit down with our sysadmin on that server tomorrow and attempt the install. If it works, I’ll document the changes and make sure the gpc-dev group gets them. Also,

FW: Research Advisory Council presentation submission

2015-01-06 Thread Campbell, James R
Colleagues We have been accepted for a presentation of a progress report from GPC at the Epic Spring Research Council on March 18th. Apologies to Childrens and Marshfield but since Russ is unable to make the session are any of our other Epic sites interested in joining me for the joint session

clarification on letters of support; not needed for LOI phase

2015-01-06 Thread Russ Waitman
Brittany and Steve, Was discussing the LOI on the dev call and it looks like on page 4 of the application guidelines: Step 2: Submit a Letter of Intent (LOI) An LOI is required for new and resubmitted applications, and it must be submitted before completion of an application. Download the PFA-sp

Hackathon II survey, need job title for secure wi-fi

2015-01-06 Thread Bos, Angela
The field "Job Title" has been added to the Hackathon II survey. This field is required by UTHSCSA to permit secure wi-fi access. Please update your survey if you have already responded, or fill it out if you haven't done so yet. https://redcap.uthscsa.edu/REDCap/surveys/?s=qcLVmeAfzt Thanks!

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2015-01-06 Thread GPC Informatics
#90: Diagnoses Modifiers for data attribution --+ Reporter: campbell | Owner: ngraham Type: design-issue | Status: assigned Priority: major | Milestone: data-domains2 Component: data-stds | Resolution:

gpc-dev Jan 6 agenda (in progress)

2015-01-06 Thread Dan Connolly
I'm still struggling with today's agenda... * Jan 6 gpc-dev notes reminder: WISC offered to scribe. -- Dan ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu h

PCORnet DRN Query Tool Software Update

2015-01-06 Thread Verhagen, Laurel A
FYI – a new version of PopMedNet is available for download. Network is down until Thursday 1/8. Laurel From: PCORnet DRN Team [mailto:pcornet...@popmednet.org] Sent: Tuesday, December 30, 2014 3:30 PM To: PopMedNet Support Subject: PCORnet DRN Query Tool Software Update Dear PCORnet DRN Query T